Papers

BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies.

Communications biology
Chandrakumar I, Gauthier NPG, Nelson C, Bonsall MB, Locher K, Charles M, MacDonald C, Krajden M, Manges AR, Chorlton SD
2022-02-22

Birth cohort relative to an influenza A virus’s antigenic cluster introduction drives patterns of children’s antibody titers.

PLoS pathogens
Brouwer AF, Balmaseda A, Gresh L, Patel M, Ojeda S, Schiller AJ, Lopez R, Webby RJ, Nelson MI, Kuan G, Gordon A
2022-02-22

Neural alterations in working memory of mild-moderate TBI: An fMRI study in Malaysia.

Journal of neuroscience research
Chai WJ, Abd Hamid AI, Omar H, Abdul Rahman MR, Fitzrol DN, Idris Z, Ghani ARI, Wan Mohamad WNA, Mustafar F, Hanafi MH, Kandasamy R, Abdullah MZ, Amaruchkul K, Valdes-Sosa PA, Bringas-Vega ML, Biswal B, Songsiri J, Yaacob H, Ibrahim H, Sumari P, Noh NA, Musa KI, Ahmad AH, Azman A, Jamir Singh PS, Othman A, Abdullah JM
2022-02-22

ARBO: Arbovirus modeling and uncertainty quantification toolbox.

Software impacts
Tosin M, Dantas E, Cunha A Jr., Morrison RE
2022-02-22

A review of epidemiological models of Clostridioides difficile transmission and control (2009-2021).

Anaerobe
Lanzas C, Jara M, Tucker R, Curtis S,
2022-02-22

A hierarchical model for analyzing multi-site individual-level disease surveillance data from multiple systems.

Biometrics
Zhang Y, Chang HH, Cheng Q, Collender PA, Li T, He J, Remais JV
2022-02-21

Inferring person-to-person networks of Plasmodium falciparum transmission: are analyses of routine surveillance data up to the task?

Malaria journal
Huber JH, Hsiang MS, Dlamini N, Murphy M, Vilakati S, Nhlabathi N, Lerch A, Nielsen R, Ntshalintshali N, Greenhouse B, Perkins TA
2022-02-21

Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local level.

BMC medicine
Meakin S, Abbott S, Bosse N, Munday J, Gruson H, Hellewell J, Sherratt K, , Funk S
2022-02-21

Incorporating patient-reported outcomes into shared decision-making in the management of patients with osteoarthritis of the knee: a hybrid effectiveness-implementation study protocol.

BMJ open
Lin E, Uhler LM, Finley EP, Jayakumar P, Rathouz PJ, Bozic KJ, Tsevat J
2022-02-21

Social networks, high-risk anal HPV and coinfection with HIV in young sexual minority men.

Sexually transmitted infections
Fujimoto K, Nyitray AG, Kuo J, Zhao J, Hwang LY, Chiao E, Giuliano AR, Schneider JA, Khanna A
2022-02-19

Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold.

Journal of theoretical biology
M Gomes MG, Ferreira MU, Corder RM, King JG, Souto-Maior C, Penha-Gonçalves C, Gonçalves G, Chikina M, Pegden W, Aguas R
2022-02-18

ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders.

Bioinformatics (Oxford, England)
Heydari AA, Davalos OA, Zhao L, Hoyer KK, Sindi SS
2022-02-18

Media Exposure, Behavioural Risk Factors and HIV Testing among Women of Reproductive Age in Papua New Guinea: A Cross-Sectional Study.

Tropical medicine and infectious disease
Adegboye OA, Ezechukwu HC, Woodall H, Brough M, Robertson-Smith J, Paba R, Czech G, Emeto TI
2022-02-18

Date of introduction and epidemiologic patterns of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020.

Wellcome open research
Koltai M, Warsame A, Bashiir F, Freemantle T, Reeve C, Williams C, Jit M, Flasche S, Davies NG, , Aweis A, Ahmed M, Dalmar A, Checchi F
2022-02-18

On multifactorial drivers for malaria rebound in Brazil: a spatio-temporal analysis.

Malaria journal
Ayala MJC, Bastos LS, Villela DAM
2022-02-17

Predicting covid-19 outcomes.

BMJ (Clinical research ed.)
Habib AR, Lo NC
2022-02-17

Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.

Nature communications
Lindsey BB, Villabona-Arenas CJ, Campbell F, Keeley AJ, Parker MD, Shah DR, Parsons H, Zhang P, Kakkar N, Gallis M, Foulkes BH, Wolverson P, Louka SF, Christou S, State A, Johnson K, Raza M, Hsu S, Jombart T, Cori A, , , , Evans CM, Partridge DG, Atkins KE, Hué S, de Silva TI
2022-02-17

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