Papers

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.

GigaScience
Griffiths EJ, Timme RE, Mendes CI, Page AJ, Alikhan NF, Fornika D, Maguire F, Campos J, Park D, Olawoye IB, Oluniyi PE, Anderson D, Christoffels A, da Silva AG, Cameron R, Dooley D, Katz LS, Black A, Karsch-Mizrachi I, Barrett T, Johnston A, Connor TR, Nicholls SM, Witney AA, Tyson GH, Tausch SH, Raphenya AR, Alcock B, Aanensen DM, Hodcroft E, Hsiao WWL, Vasconcelos ATR, MacCannell DR
2022-02-16

Reproduction Numbers of SARS-CoV-2 Variants: A Systematic Review and Meta-analysis.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Du Z, Liu C, Wang C, Xu L, Xu M, Wang L, Bai Y, Xu X, Lau EHY, Wu P, Cowling BJ
2022-02-16

Prevalence of Newcastle disease and associated risk factors in domestic chickens in the Indian state of Odisha.

PloS one
Sahoo N, Bhuyan K, Panda B, Behura NC, Biswal S, Samal L, Chaudhary D, Bansal N, Singh R, Joshi VG, Jindal N, Mahajan NK, Maan S, Ravishankar C, Rajasekhar R, Radzio-Basu J, Herzog CM, Kapur V, Mor SK, Goyal SM
2022-02-16

Efficacy of a dietary supplement in dogs with osteoarthritis: A randomized placebo-controlled, double-blind clinical trial.

PloS one
Martello E, Bigliati M, Adami R, Biasibetti E, Bisanzio D, Meineri G, Bruni N
2022-02-16

Inference is bliss: Simulation for power estimation for an observational study of a cholera outbreak intervention.

PLoS neglected tropical diseases
Ratnayake R, Checchi F, Jarvis CI, Edmunds WJ, Finger F
2022-02-16

Population antibody responses following COVID-19 vaccination in 212,102 individuals.

Nature communications
Ward H, Whitaker M, Flower B, Tang SN, Atchison C, Darzi A, Donnelly CA, Cann A, Diggle PJ, Ashby D, Riley S, Barclay WS, Elliott P, Cooke GS
2022-02-16

Parasite dynamics in North American monarchs predicted by host density and seasonal migratory culling.

The Journal of animal ecology
Majewska AA, Davis AK, Altizer S, de Roode JC
2022-02-16

Subspecies Is Associated With Length at Birth, Exclusive Breastfeeding, and Decreased Risk of Enteric Virus Infections, but Not With Histo-Blood Group Antigens, Oral Vaccine Response or Later Growth in Three Birth Cohorts.

Frontiers in pediatrics
Colston JM, Taniuchi M, Ahmed T, Ferdousi T, Kabir F, Mduma E, Nshama R, Iqbal NT, Haque R, Ahmed T, Ali Bhutta Z, Kosek MN, Platts-Mills JA
2022-02-16

Why Senescent Cells Are Resistant to Apoptosis: An Insight for Senolytic Development.

Frontiers in cell and developmental biology
Hu L, Li H, Zi M, Li W, Liu J, Yang Y, Zhou D, Kong QP, Zhang Y, He Y
2022-02-16

Transmission Of Tuberculosis Among illicit drug use Linkages (TOTAL): A cross-sectional observational study protocol using respondent driven sampling.

PloS one
Carney T, Rooney JA, Niemand N, Myers B, Theron D, Wood R, White LF, Meade CS, Chegou NN, Ragan E, Walzl G, Horsburgh R, Warren RM, Jacobson KR
2022-02-15

Geographic disparities and predictors of COVID-19 hospitalization risks in the St. Louis Area, Missouri (USA).

BMC public health
Igoe M, Das P, Lenhart S, Lloyd AL, Luong L, Tian D, Lanzas C, Odoi A
2022-02-15

Vaccine effectiveness against COVID-19 among symptomatic persons aged ≥12 years with reported contact with COVID-19 cases, February-September 2021.

Influenza and other respiratory viruses
Chung JR, Kim SS, Belongia EA, McLean HQ, King JP, Nowalk MP, Zimmerman RK, Moehling Geffel K, Martin ET, Monto AS, Lamerato LE, Gaglani M, Hoffman E, Volz M, Jackson ML, Jackson LA, Patel MM, Flannery B
2022-02-15

Increasing prediction performance of colorectal cancer disease status using random forests classification based on metagenomic shotgun sequencing data.

Synthetic and systems biotechnology
Gao Y, Zhu Z, Sun F
2022-02-15

Bluetongue Research at a Crossroads: Modern Genomics Tools Can Pave the Way to New Insights.

Annual review of animal biosciences
Kopanke J, Carpenter M, Lee J, Reed K, Rodgers C, Burton M, Lovett K, Westrich JA, McNulty E, McDermott E, Barbera C, Cavany S, Rohr JR, Perkins TA, Mathiason CK, Stenglein M, Mayo C
2022-02-15

Structural racism and COVID-19 response: higher risk of exposure drives disparate COVID-19 deaths among Black and Hispanic/Latinx residents of Illinois, USA.

BMC public health
Holden TM, Simon MA, Arnold DT, Halloway V, Gerardin J
2022-02-15

Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic.

Virus evolution
Babiker A, Martin MA, Marvil C, Bellman S, Petit Iii RA, Bradley HL, Stittleburg VD, Ingersoll J, Kraft CS, Li Y, Zhang J, Paden CR, Read TD, Waggoner JJ, Koelle K, Piantadosi A
2022-02-15

North to south gradient and local waves of influenza in Chile.

Scientific reports
Garcia-Calavaro C, Harrison LH, Pokutnaya D, Mair CF, Brooks MM, van Panhuis W
2022-02-14

Forest malaria and prospects for anti-malarial chemoprophylaxis among forest goers: findings from a qualitative study in Thailand.

Malaria journal
Jongdeepaisal M, Khonputsa P, Prasert O, Maneenet S, Pongsoipetch K, Jatapai A, Rotejanaprasert C, Sudathip P, Maude RJ, Pell C
2022-02-14

Understanding how fast SARS-CoV-2 variants transmit from household studies.

The Lancet. Infectious diseases
Yang Y, Kenah E
2022-02-14

Generation time of the alpha and delta SARS-CoV-2 variants: an epidemiological analysis.

The Lancet. Infectious diseases
Hart WS, Miller E, Andrews NJ, Waight P, Maini PK, Funk S, Thompson RN
2022-02-14

MIDAS