Papers

Global holiday datasets for understanding seasonal human mobility and population dynamics.

Scientific data
Lai S, Sorichetta A, Steele J, Ruktanonchai CW, Cunningham AD, Rogers G, Koper P, Woods D, Bondarenko M, Ruktanonchai NW, Shi W, Tatem AJ
2022-01-20

Association between IGF-1 levels ranges and all-cause mortality: A meta-analysis.

Aging cell
Rahmani J, Montesanto A, Giovannucci E, Zand H, Barati M, Kopchick JJ, Mirisola MG, Lagani V, Bawadi H, Vardavas R, Laviano A, Christensen K, Passarino G, Longo VD
2022-01-20

Complex marine microbial communities partition metabolism of scarce resources over the diel cycle.

Nature ecology & evolution
Muratore D, Boysen AK, Harke MJ, Becker KW, Casey JR, Coesel SN, Mende DR, Wilson ST, Aylward FO, Eppley JM, Vislova A, Peng S, Rodriguez-Gonzalez RA, Beckett SJ, Virginia Armbrust E, DeLong EF, Karl DM, White AE, Zehr JP, Van Mooy BAS, Dyhrman ST, Ingalls AE, Weitz JS
2022-01-20

Variation in excess all-cause mortality by age, sex, and province during the first wave of the COVID-19 pandemic in Italy.

Scientific reports
Henry NJ, Elagali A, Nguyen M, Chipeta MG, Moore CE
2022-01-20

WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications.

Journal of chemical theory and computation
Russo JD, Zhang S, Leung JMG, Bogetti AT, Thompson JP, DeGrave AJ, Torrillo PA, Pratt AJ, Wong KF, Xia J, Copperman J, Adelman JL, Zwier MC, LeBard DN, Zuckerman DM, Chong LT
2022-01-19

Racial Disparities in Spatial and Temporal Youth Suicide Clusters.

Journal of the American Academy of Child and Adolescent Psychiatry
Platt JM, Pamplin JR 2nd., Gimbrone C, Rutherford C, Kandula S, Olfson M, Gould MS, Martínez-Alés G, Shaman J, Keyes K
2022-01-08

Streamlining physiologically-based pharmacokinetic model design for intravenous injection delivery of nanoparticle drugs.

CPT: pharmacometrics & systems pharmacology
Le AD, Wearing HJ, Li D
2022-01-19

Both consumptive and non-consumptive effects of predators impact mosquito populations and have implications for disease transmission.

eLife
Russell MC, Herzog CM, Gajewski Z, Ramsay C, El Moustaid F, Evans MV, Desai T, Gottdenker NL, Hermann SL, Power AG, McCall AC
2022-01-19

Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling.

Microbiology spectrum
Perkins TA, Stephens M, Alvarez Barrios W, Cavany S, Rulli L, Pfrender ME
2022-01-19

Identification of a permissive secondary mutation that restores the enzymatic activity of oseltamivir resistance mutation H275Y.

Journal of virology
Jiang L, Samant N, Liu P, Somasundaran M, Jensen JD, Marasco WA, Kowalik TF, Schiffer CA, Finberg RW, Wang JP, Bolon DNA
2022-01-19

Severity of the COVID-19 pandemic assessed with all-cause mortality in the United States during 2020.

Influenza and other respiratory viruses
Dahlgren FS, Rossen LM, Fry AM, Reed C
2022-01-19

Changing epidemiology of hand, foot, and mouth disease in China, 2013-2019: a population-based study.

The Lancet regional health. Western Pacific
Hong J, Liu F, Qi H, Tu W, Ward MP, Ren M, Zhao Z, Su Q, Huang J, Chen X, Le J, Ren X, Hu Y, Cowling B, Li Z, Chang Z, Zhang Z
2022-01-18

Plasmodium falciparum genomic surveillance reveals spatial and temporal trends, association of genetic and physical distance, and household clustering.

Scientific reports
Sy M, Deme AB, Warren JL, Early A, Schaffner S, Daniels RF, Dieye B, Ndiaye IM, Diedhiou Y, Mbaye AM, Volkman SK, Hartl DL, Wirth DF, Ndiaye D, Bei AK
2022-01-18

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.

bioRxiv : the preprint server for biology
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins G, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A, , Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL
2022-01-18

AI Pontryagin or how artificial neural networks learn to control dynamical systems.

Nature communications
Böttcher L, Antulov-Fantulin N, Asikis T
2022-01-17

A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research.

Metabolites
Du X, Aristizabal-Henao JJ, Garrett TJ, Brochhausen M, Hogan WR, Lemas DJ
2022-01-17

A spatiotemporal analysis of cattle herd movement in relation to drinking-water sources: implications for Cryptosporidium control in rural Kenya.

Environmental science and pollution research international
Floyd JR, Kwoba E, Mwangi T, Okotto-Okotto J, Wanza P, Wardrop N, Yu W, Wright JA
2022-01-17

Purifying selection determines the short-term time dependency of evolutionary rates in SARS-CoV-2 and pH1N1 influenza.

Molecular biology and evolution
Ghafari M, du Plessis L, Raghwani J, Bhatt S, Xu B, Pybus OG, Katzourakis A
2022-01-17

Five-Year Community Surveillance Study for Acute Respiratory Infections Using Text Messaging: Findings from the MoSAIC Study.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Stockwell MS, Reed C, Vargas CY, Wang L, Alba LR, Jia H, LaRussa P, Larson EL, Saiman L
2022-01-17

TB Hackathon: Development and Comparison of Five Models to Predict Subnational Tuberculosis Prevalence in Pakistan.

Tropical medicine and infectious disease
Alba S, Rood E, Mecatti F, Ross JM, Dodd PJ, Chang S, Potgieter M, Bertarelli G, Henry NJ, LeGrand KE, Trouleau W, Shaweno D, MacPherson P, Qin ZZ, Mergenthaler C, Giardina F, Augustijn EW, Baloch AQ, Latif A
2022-01-17

MIDAS