Papers

A spatiotemporal analysis of cattle herd movement in relation to drinking-water sources: implications for Cryptosporidium control in rural Kenya.

Environmental science and pollution research international
Floyd JR, Kwoba E, Mwangi T, Okotto-Okotto J, Wanza P, Wardrop N, Yu W, Wright JA
2022-01-17

Purifying selection determines the short-term time dependency of evolutionary rates in SARS-CoV-2 and pH1N1 influenza.

Molecular biology and evolution
Ghafari M, du Plessis L, Raghwani J, Bhatt S, Xu B, Pybus OG, Katzourakis A
2022-01-17

Five-Year Community Surveillance Study for Acute Respiratory Infections Using Text Messaging: Findings from the MoSAIC Study.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Stockwell MS, Reed C, Vargas CY, Wang L, Alba LR, Jia H, LaRussa P, Larson EL, Saiman L
2022-01-17

TB Hackathon: Development and Comparison of Five Models to Predict Subnational Tuberculosis Prevalence in Pakistan.

Tropical medicine and infectious disease
Alba S, Rood E, Mecatti F, Ross JM, Dodd PJ, Chang S, Potgieter M, Bertarelli G, Henry NJ, LeGrand KE, Trouleau W, Shaweno D, MacPherson P, Qin ZZ, Mergenthaler C, Giardina F, Augustijn EW, Baloch AQ, Latif A
2022-01-17

Study design and rationale for a cluster randomized trial of a safe child feces management intervention in rural Odisha, India.

BMC public health
Sclar GD, Bauza V, Mosler HJ, Bisoyi A, Chang HH, Clasen TF
2022-01-15

Longitudinal analysis reveals high prevalence of Epstein-Barr virus associated with multiple sclerosis.

Science (New York, N.Y.)
Bjornevik K, Cortese M, Healy BC, Kuhle J, Mina MJ, Leng Y, Elledge SJ, Niebuhr DW, Scher AI, Munger KL, Ascherio A
2022-01-14

Model-based evaluation of alternative reactive class closure strategies against COVID-19.

Nature communications
Liu QH, Zhang J, Peng C, Litvinova M, Huang S, Poletti P, Trentini F, Guzzetta G, Marziano V, Zhou T, Viboud C, Bento AI, Lv J, Vespignani A, Merler S, Yu H, Ajelli M
2022-01-14

In medicine, how do we machine learn anything real?

Patterns (New York, N.Y.)
Ghassemi M, Nsoesie EO
2022-01-14

Emerging Socioeconomic Disparities in COVID-19 Vaccine Second-Dose Completion Rates in the United States.

Vaccines
Gertz A, Rader B, Sewalk K, Brownstein JS
2022-01-14

Family Caregivers’ Experiences and Coping Strategies in Managing Stroke Patients during the COVID-19 Pandemic: A Qualitative Exploration Study.

International journal of environmental research and public health
Haji Mukhti MI, Ibrahim MI, Tengku Ismail TA, Nadal IP, Kamalakannan S, Kinra S, Musa KI
2022-01-14

Metrics to relate COVID-19 wastewater data to clinical testing dynamics.

Water research
Xiao A, Wu F, Bushman M, Zhang J, Imakaev M, Chai PR, Duvallet C, Endo N, Erickson TB, Armas F, Arnold B, Chen H, Chandra F, Ghaeli N, Gu X, Hanage WP, Lee WL, Matus M, McElroy KA, Moniz K, Rhode SF, Thompson J, Alm EJ
2022-01-14

Leveraging serology to titrate immunisation programme functionality for diphtheria in Madagascar.

Epidemiology and infection
Razafimahatratra SL, Menezes A, Wesolowski A, Rafetrarivony L, Cauchemez S, Razafindratsimandresy R, Harimanana A, Crucitti T, Collard JM, Metcalf CJE
2022-01-13

Prevalence and Risk Factors for Pulmonary Conditions among Farmers and Ranchers in the Central United States.

Journal of agromedicine
Puvvula J, Baccaglini L, Johnson A, Du Y, Bell JE, Rautiainen RH
2022-01-13

Longer than 2 hours to antibiotics is associated with doubling of mortality in a multinational community-acquired bacterial meningitis cohort.

Scientific reports
Eisen DP, Hamilton E, Bodilsen J, Køster-Rasmussen R, Stockdale AJ, Miner J, Nielsen H, Dzupova O, Sethi V, Copson RK, Harings M, Adegboye OA
2022-01-13

and Implications for Using Whole-Genome Sequencing for Investigating Recent Tuberculosis Transmission.

Frontiers in public health
Nelson KN, Talarico S, Poonja S, McDaniel CJ, Cilnis M, Chang AH, Raz K, Noboa WS, Cowan L, Shaw T, Posey J, Silk BJ
2022-01-13

Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions.

BMC medical informatics and decision making
DeYoreo M, Rutter CM, Ozik J, Collier N
2022-01-12

People who inject drugs in metropolitan Chicago: A meta-analysis of data from 1997-2017 to inform interventions and computational modeling toward hepatitis C microelimination.

PloS one
Boodram B, Mackesy-Amiti ME, Khanna A, Brickman B, Dahari H, Ozik J
2022-01-12

Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission.

Nature medicine
Kraemer MUG, Pybus OG, Fraser C, Cauchemez S, Rambaut A, Cowling BJ
2022-01-12

Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression.

Journal of computational biology : a journal of computational molecular cell biology
Du Y, Laperriere SM, Fuhrman J, Sun F
2022-01-12

The pitfalls of inferring virus-virus interactions from co-detection prevalence data: application to influenza and SARS-CoV-2.

Proceedings. Biological sciences
Domenech de Cellès M, Goult E, Casalegno JS, Kramer SC
2022-01-12

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