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Rene Niehus

Research Associate

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COVID-19

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Papers

Reich NG, Lessler J, Funk S, Viboud C, Vespignani A, Tibshirani RJ, Shea K, Schienle M, Runge MC, Rosenfeld R, Ray EL, Niehus R, Johnson HC, Johansson MA, Hochheiser H, Gardner L, Bracher J, Borchering RK, Biggerstaff M. (2022). Collaborative Hubs: Making the Most of Predictive Epidemic Modeling. American journal of public health

Accorsi EK, Qiu X, Rumpler E, Kennedy-Shaffer L, Kahn R, Joshi K, Goldstein E, Stensrud MJ, Niehus R, Cevik M, Lipsitch M. (2021). How to detect and reduce potential sources of biases in studies of SARS-CoV-2 and COVID-19. European journal of epidemiology

Menkir TF, Chin T, Hay JA, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina MJ, Lipsitch M, Niehus R. (2021). Estimating internationally imported cases during the early COVID-19 pandemic. Nature communications, 12(1)

Niehus R, Oliveira NM, Li A, Fletcher AG, Foster KR. (2021). The evolution of strategy in bacterial warfare via the regulation of bacteriocins and antibiotics. eLife, (10)

Auguet OT, Niehus R, Gweon HS, Berkley JA, Waichungo J, Njim T, Edgeworth JD, Batra R, Chau K, Swann J, Walker SA, Peto TEA, Crook DW, Lamble S, Turner P, Cooper BS, Stoesser N. (2021). isolates causing invasive infections: An exploratory study across Cambodia, Kenya, and the UK. EClinicalMedicine, (36)

Schluter J, Peled JU, Taylor BP, Markey KA, Smith M, Taur Y, Niehus R, Staffas A, Dai A, Fontana E, Amoretti LA, Wright RJ, Morjaria S, Fenelus M, Pessin MS, Chao NJ, Lew M, Bohannon L, Bush A, Sung AD, Hohl TM, Perales MA, van den Brink MRM, Xavier JB. (2020). The gut microbiota is associated with immune cell dynamics in humans. Nature, 588(7837)

Menkir TF, Chin T, Hay J, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina M, Lipsitch M, Niehus R. (2020). Estimating the number of undetected COVID-19 cases exported internationally from all of China. medRxiv : the preprint server for health sciences

De Salazar PM, Niehus R, Taylor A, Buckee CO, Lipsitch M. (2020). Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions. Emerging infectious diseases, 26(7)

Gostic KM, McGough L, Baskerville E, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday J, Bosse N, Sherratt K, Thompson RM, White LF, Huisman J, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. (2020). Practical considerations for measuring the effective reproductive number, Rt. medRxiv : the preprint server for health sciences

Niehus R, De Salazar PM, Taylor AR, Lipsitch M. (2020). Quantifying bias of COVID-19 prevalence and severity estimates in Wuhan, China that depend on reported cases in international travelers. medRxiv : the preprint server for health sciences

De Salazar Pablo M, Niehus Rene, Taylor Aimee, Buckee Caroline O, Lipsitch Marc. (2020). Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases

Niehus R, De Salazar PM, Taylor AR, Lipsitch M. (2020). Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China. The Lancet. Infectious diseases

Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. (2020). Practical considerations for measuring the effective reproductive number, Rt. PLoS computational biology, 16(12)

Wu JT, Leung K, Bushman M, Kishore N, Niehus R, de Salazar PM, Cowling BJ, Lipsitch M, Leung GM. (2020). Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China. Nature medicine, 26(4)

Wu JT, Leung K, Bushman M, Kishore N, Niehus R, de Salazar PM, Cowling BJ, Lipsitch M, Leung GM. (2020). Addendum: Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China. Nature medicine, 26(7)

Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, Read DS, Stoesser N, . (2019). The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples. Environmental microbiome, 14(1)

Niehus R, Mitri S. (2018). Handling unpredictable ecosystems. Nature ecology & evolution, 2(8)

Niehus R, Picot A, Oliveira NM, Mitri S, Foster KR. (2017). The evolution of siderophore production as a competitive trait. Evolution; international journal of organic evolution, 71(6)

Niehus R, Mitri S, Fletcher AG, Foster KR. (2015). Migration and horizontal gene transfer divide microbial genomes into multiple niches. Nature communications, (6)

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