Vladimir Minin






Fintzi J, Wakefield J, Minin VN. (2021). A linear noise approximation for stochastic epidemic models fit to partially observed incidence counts. Biometrics

Magee AF, Höhna S, Vasylyeva TI, Leaché AD, Minin VN. (2020). Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts. PLoS computational biology, 16(10)

Fintzi J, Bayer D, Goldstein I, Lumbard K, Ricotta E, Warner S, Busch LM, Strich JR, Chertow DS, Parker DM, Boden-Albala B, Dratch A, Chhuon R, Quick N, Zahn M, Minin VN. (2020). Using multiple data streams to estimate and forecast SARS-CoV-2 transmission dynamics, with application to the virus spread in Orange County, California. ArXiv

Fourment M, Magee AF, Whidden C, Bilge A, Matsen FA, Minin VN. (2019). 19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology. Systematic biology

Faulkner JR, Minin VN. (2018). Locally Adaptive Smoothing with Markov Random Fields and Shrinkage Priors. Bayesian analysis, 13(1)

Ho LST, Xu J, Crawford FW, Minin VN, Suchard MA. (2018). Birth/birth-death processes and their computable transition probabilities with biological applications. Journal of mathematical biology, 76(4)

Fintzi J, Cui X, Wakefield J, Minin VN. (2017). Efficient Data Augmentation for Fitting Stochastic Epidemic Models to Prevalence Data. Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America, 26(4)

Karcher MD, Palacios JA, Lan S, Minin VN. (2017). phylodyn: an R package for phylodynamic simulation and inference. Molecular ecology resources, 17(1)

Karcher MD, Palacios JA, Bedford T, Suchard MA, Minin VN. (2016). Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. PLoS computational biology, 12(3)

Koepke AA, Longini IM Jr., Halloran ME, Wakefield J, Minin VN. (2016). PREDICTIVE MODELING OF CHOLERA OUTBREAKS IN BANGLADESH. The annals of applied statistics, 10(2)

Lan S, Palacios JA, Karcher M, Minin VN, Shahbaba B. (2015). An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics. Bioinformatics (Oxford, England), 31(20)

Chi PB, Chattopadhyay S, Lemey P, Sokurenko EV, Minin VN. (2015). Synonymous and nonsynonymous distances help untangle convergent evolution and recombination. Statistical applications in genetics and molecular biology, 14(4)

Xu J, Guttorp P, Kato-Maeda M, Minin VN. (2015). Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements. Biometrics, 71(4)

Xu J, Minin VN. (2015). Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing. Uncertainty in artificial intelligence : proceedings of the ... conference. Conference on Uncertainty in Artificial Intelligence, (2015)

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