Papers

Optimal regularized inverse matrices for inverse problems

SIAM Journal on Matrix Analysis and Applications
Julianne Chung, Matthias Chung
2017-05-30

Establishment and cryptic transmission of Zika virus in Brazil and the Americas.

Nature
Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET Jr., Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG
2017-05-26

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.

AIDS research and human retroviruses
Ratmann O, Wymant C, Colijn C, Danaviah S, Essex M, Frost SDW, Gall A, Gaiseitsiwe S, Grabowski M, Gray R, Guindon S, von Haeseler A, Kaleebu P, Kendall M, Kozlov A, Manasa J, Minh BQ, Moyo S, Novitsky V, Nsubuga R, Pillay S, Quinn TC, Serwadda D, Ssemwanga D, Stamatakis A, Trifinopoulos J, Wawer M, Leigh Brown A, de Oliveira T, Kellam P, Pillay D, Fraser C
2017-05-26

Zika virus evolution and spread in the Americas.

Nature
Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes KG, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC
2017-05-26

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Nature
Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr., Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th., Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG
2017-05-26

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Nature protocols
Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr., Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ
2017-05-26

The geography of measles vaccination in the African Great Lakes region.

Nature communications
Takahashi S, Metcalf CJE, Ferrari MJ, Tatem AJ, Lessler J
2017-05-25

Antimicrobial Resistance Risks of Cholera Prophylaxis for United Nations Peacekeepers.

Antimicrobial agents and chemotherapy
Kunkel A, Lewnard JA, Pitzer VE, Cohen T
2017-05-24

Population implications of the use of bedaquiline in people with extensively drug-resistant tuberculosis: are fears of resistance justified?

The Lancet. Infectious diseases
Kunkel A, Furin J, Cohen T
2017-05-24

Integrating Environmental Monitoring and Mosquito Surveillance to Predict Vector-borne Disease: Prospective Forecasts of a West Nile Virus Outbreak.

PLoS currents
Davis JK, Vincent G, Hildreth MB, Kightlinger L, Carlson C, Wimberly MC
2017-05-23

Disparities in digital reporting of illness: A demographic and socioeconomic assessment.

Preventive medicine
Henly S, Tuli G, Kluberg SA, Hawkins JB, Nguyen QC, Anema A, Maharana A, Brownstein JS, Nsoesie EO
2017-05-22

Fast and reliable gate arrangement pre-design of resin infusion processes

Composites Part A: Applied Science and Manufacturing
F Sánchez, L Domenech, V García, N Montés, A Falcó, E Cueto, F Chinesta, P Fideu
2017-05-22

Cost-effectiveness analysis of typhoid conjugate vaccines in five endemic low- and middle-income settings.

Vaccine
Antillón M, Bilcke J, Paltiel AD, Pitzer VE
2017-05-22

Contrasting effects of environment and genetics generate a continuum of parallel evolution

Nature Ecology & Evolution
Yoel E Stuart, Thor Veen, Jesse N Weber, Dieta Hanson, Mark Ravinet, Brian K Lohman, Cole J Thompson, Tania Tasneem, Andrew Doggett, Rebecca Izen, Newaz Ahmed, Rowan DH Barrett, Andrew P Hendry, Catherine L Peichel, Daniel I Bolnick
2017-05-22

Declines in Human Papillomavirus (HPV)-Associated High-Grade Cervical Lesions After Introduction of HPV Vaccines in Connecticut, United States, 2008-2015.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Niccolai LM, Meek JI, Brackney M, Hadler JL, Sosa LE, Weinberger DM
2017-05-19

MIDAS