Papers

The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome.

PLoS pathogens
Azarian T, Grant LR, Arnold BJ, Hammitt LL, Reid R, Santosham M, Weatherholtz R, Goklish N, Thompson CM, Bentley SD, O’Brien KL, Hanage WP, Lipsitch M
2018-04-01

EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks

Journal of Statistical Software
Jenness SM, Goodreau SM, Morris M
2018-04-01

Transmission traits of malaria parasites within the mosquito: Genetic variation, phenotypic plasticity, and consequences for control.

Evolutionary applications
Lefevre T, Ohm J, Dabiré KR, Cohuet A, Choisy M, Thomas MB, Cator L
2018-04-01

Enhanced surveillance for Rift Valley fever in livestock during El Niño rains and threat of RVF outbreak, Kenya, 2015-2016

PLoS neglected tropical diseases
Oyas H, Holmstrom L, Kemunto NP, Muturi M, Mwatondo A, Osoro E, Bitek A, Bett B, Githinji JW, Thumbi SM, Widdowson MA, Munyua PM, Njenga MK
2018-04-01

Use of Multiple Imputation to Estimate the Proportion of Respiratory Virus Detections Among Patients Hospitalized With Community-Acquired Pneumonia.

Open forum infectious diseases
Bozio CH, Flanders WD, Finelli L, Bramley AM, Reed C, Gandhi NR, Vidal JE, Erdman D, Levine MZ, Lindstrom S, Ampofo K, Arnold SR, Self WH, Williams DJ, Grijalva CG, Anderson EJ, McCullers JA, Edwards KM, Pavia AT, Wunderink RG, Jain S
2018-04-01

Personalizing physical exercise in a computational model of fuel homeostasis.

PLoS computational biology
Palumbo MC, Morettini M, Tieri P, Diele F, Sacchetti M, Castiglione F
2018-04-01

Preprints: An underutilized mechanism to accelerate outbreak science.

PLoS medicine
Johansson MA, Reich NG, Meyers LA, Lipsitch M
2018-04-01

The description and number of undiscovered mammal species.

Ecology and evolution
Fisher MA, Vinson JE, Gittleman JL, Drake JM
2018-04-01

Two-scale dispersal estimation for biological invasions via synthetic likelihood.

Ecography
Barbu CM, Sethuraman K, Billig EMW, Levy MZ
2018-04-01

, on the behavior of a key reservoir host.

Ecology and evolution
Ostfeld RS, Brisson D, Oggenfuss K, Devine J, Levy MZ, Keesing F
2018-04-01

Image analysis and machine learning for detecting malaria

Translational Research
Mahdieh Poostchi, Kamolrat Silamut, Richard J Maude, Stefan Jaeger, George Thoma
2018-04-01

Introducing the JMBE themed issue on science communication.

Journal of microbiology & biology education
Mangan DF, Cloyd ET, Romo JA, Wessner DR, Westenberg DJ, Adukwu E, Menninger H, Gardy J
2018-03-30

The use of longitudinal cohorts for studies of dengue viral pathogenesis and protection.

Current opinion in virology
Katzelnick LC, Harris E
2018-03-30

The impact of past vaccination coverage and immunity on pertussis resurgence.

Science translational medicine
Domenech de Cellès M, Magpantay FMG, King AA, Rohani P
2018-03-28

Microsimulation Modeling for Health Decision Sciences Using R: A Tutorial.

Medical decision making : an international journal of the Society for Medical Decision Making
Krijkamp EM, Alarid-Escudero F, Enns EA, Jalal HJ, Hunink MGM, Pechlivanoglou P
2018-03-28

Transcriptome throughout Colonization and Infection in a Mouse Model.

mSphere
Fletcher JR, Erwin S, Lanzas C, Theriot CM
2018-03-28

Hepatitis C virus treatment as prevention in people who inject drugs.

The Lancet. Infectious diseases
White PJ, Abubakar I
2018-03-28

Partner age differences and associated sexual risk behaviours among adolescent girls and young women in a cash transfer programme for schooling in Malawi.

BMC public health
Beauclair R, Dushoff J, Delva W
2018-03-27

Transmission dynamics of influenza in two major cities of Uganda.

Epidemics
Yang W, Cummings MJ, Bakamutumaho B, Kayiwa J, Owor N, Namagambo B, Byaruhanga T, Lutwama JJ, O’Donnell MR, Shaman J
2018-03-27

The macroecology of cancer incidences in humans is associated with large-scale assemblages of endemic infections.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases
Jacqueline C, Abbate JL, Sorci G, Guégan JF, Thomas F, Roche B
2018-03-27

MIDAS