Papers

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.

BMC systems biology
Xia LC, Steele JA, Cram JA, Cardon ZG, Simmons SL, Vallino JJ, Fuhrman JA, Sun F
2011-12-14

The odds of duplicate gene persistence after polyploidization.

BMC genomics
Chain FJ, Dushoff J, Evans BJ
2011-12-12

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.

Nature biotechnology
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R, Wang J, Wang W
2011-12-11

Composition of the sequence downstream of the dengue virus 5′ cyclization sequence (dCS) affects viral RNA replication.

Virology
Friebe P, Peña J, Pohl MO, Harris E
2011-12-06

Accurate genome relative abundance estimation based on shotgun metagenomic reads.

PLoS One
Xia LC, Cram JA, Chen T, Fuhrman JA, Sun F
2011-12-06

Impact of rotavirus vaccination on epidemiological dynamics in England and Wales.

Vaccine
Atkins KE, Shim E, Pitzer VE, Galvani AP
2011-12-03

Mechanistic modeling of the effects of myoferlin on tumor cell invasion.

Proceedings of the National Academy of Sciences of the United States of America
Eisenberg MC, Kim Y, Li R, Ackerman WE, Kniss DA, Friedman A
2011-12-03

Protection from secondary dengue virus infection in a mouse model reveals the role of serotype cross-reactive B and T cells.

Journal of immunology (Baltimore, Md. : 1950)
Zompi S, Santich BH, Beatty PR, Harris E
2011-12-02

Recommendations on modern contact investigation methods for enhancing tuberculosis control.

The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease
Cook VJ, Shah L, Gardy J, Bourgeois AC
2011-12-02

The association of seasonal influenza vaccination with pandemic influenza H1N1 2009 infection.

Vaccine
Kelly H, Mercer G, Cowling BJ
2011-11-29

Cost-effectiveness of vaccination against herpes zoster in adults aged over 60 years in Belgium.

Vaccine
Bilcke J, Marais C, Ogunjimi B, Willem L, Hens N, Beutels P
2011-11-29

Optimal link removal for epidemic mitigation: a two-way partitioning approach.

Mathematical biosciences
Enns EA, Mounzer JJ, Brandeau ML
2011-11-26

Role of concurrency in generalised HIV epidemics.

Lancet (London, England)
Morris M, Epstein H
2011-11-26

A game dynamic model for vaccine skeptics and vaccine believers: measles as an example.

Journal of theoretical biology
Shim E, Grefenstette JJ, Albert SM, Cakouros BE, Burke DS
2011-11-24

Comment on “The inhibiting Fc receptor for IgG, FcγRIIB, is a modifier of autoimmune susceptibility”.

Journal of immunology (Baltimore, Md. : 1950)
Smith KG, Willcocks LC, Lyons PA
2011-11-22

The cost-effectiveness of immediate treatment, percutaneous biopsy and active surveillance for the diagnosis of the small solid renal mass: evidence from a Markov model.

The Journal of urology
Heilbrun ME, Yu J, Smith KJ, Dechet CB, Zagoria RJ, Roberts MS
2011-11-18

A unified model of autopolyploid establishment and evolution.

The American naturalist
Oswald BP, Nuismer SL
2011-11-18

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission.

AIDS (London, England)
Herbeck JT, Müller V, Maust BS, Ledergerber B, Torti C, Di Giambenedetto S, Gras L, Günthard HF, Jacobson LP, Mullins JI, Gottlieb GS
2011-11-18

Secular trends in Helicobacter pylori seroprevalence in adults in the United States: evidence for sustained race/ethnic disparities.

American journal of epidemiology
Grad YH, Lipsitch M, Aiello AE
2011-11-17

Modeling rotavirus strain dynamics in developed countries to understand the potential impact of vaccination on genotype distributions.

Proceedings of the National Academy of Sciences of the United States of America
Pitzer VE, Patel MM, Lopman BA, Viboud C, Parashar UD, Grenfell BT
2011-11-16

MIDAS