Papers

Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans.

Nature communications
Lim C, Hansen E, DeSimone TM, Moreno Y, Junker K, Bei A, Brugnara C, Buckee CO, Duraisingh MT
2013-03-29

SeqEntropy: genome-wide assessment of repeats for short read sequencing.

PloS one
Chu HT, Hsiao WW, Tsao TT, Hsu DF, Chen CC, Lee SA, Kao CY
2013-03-27

Short communication: effect of short-course antenatal zidovudine and single-dose nevirapine on the BED capture enzyme immunoassay levels in HIV type 1 subtype C infection.

AIDS research and human retroviruses
Wang R, Weng J, Moyo S, Pain D, Barr CD, Maruapula D, Mongwato D, Makhema J, Novitsky V, Essex M
2013-03-26

Intra-host evolutionary rates in HIV-1C env and gag during primary infection.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases
Novitsky V, Wang R, Rossenkhan R, Moyo S, Essex M
2013-03-26

Safinamide and flecainide protect axons and reduce microglial activation in models of multiple sclerosis.

Brain : a journal of neurology
Morsali D, Bechtold D, Lee W, Chauhdry S, Palchaudhuri U, Hassoon P, Snell DM, Malpass K, Piers T, Pocock J, Roach A, Smith KJ
2013-03-23

Optimal vaccine allocation for the early mitigation of pandemic influenza.

PLoS computational biology
Matrajt L, Halloran ME, Longini IM Jr.
2013-03-21

A multi-scale analysis of influenza A virus fitness trade-offs due to temperature-dependent virus persistence.

PLoS computational biology
Handel A, Brown J, Stallknecht D, Rohani P
2013-03-21

Bayesian estimation of mixture models with prespecified elements to compare drug resistance in treatment-naïve and experienced tuberculosis cases.

PLoS computational biology
Izu A, Cohen T, Degruttola V
2013-03-21

Viral phylodynamics.

PLoS computational biology
Volz EM, Koelle K, Bedford T
2013-03-21

A method for estimating from thermometer sales the incidence of diseases that are symptomatically similar to influenza.

Journal of Biomedical Informatics
Villamarín R, Cooper G, Wagner M, Tsui FC, Espino JU
2013-03-19

Modeling of cost effectiveness of pneumococcal conjugate vaccination strategies in U.S. older adults.

American Journal of Preventive Medicine
Smith KJ, Wateska AR, Nowalk MP, Raymund M, Lee BY, Zimmerman RK
2013-03-19

L31. A GWAS in ANCA-associated vasculitis: will genetics help re-define clinical classification?

Presse medicale (Paris, France : 1983)
Lyons PA, Smith KG
2013-03-16

Qualitative dynamics of lowly- and highly-pathogenic avian influenza strains.

Mathematical biosciences
Agusto FB, Gumel AB
2013-03-15

Evolution of the temporal persistence of immune protection.

Biology letters
Garnier R, Boulinier T, Gandon S
2013-03-15

Planning for the invisible: projecting resources needed to identify and treat all patients with MDR-TB.

The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease
Mitnick CD, Keravec J, Cohen T
2013-03-15

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes.

The ISME journal
Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA, Leigh SR
2013-03-15

tat Exon 1 exhibits functional diversity during HIV-1 subtype C primary infection.

Journal of virology
Rossenkhan R, MacLeod IJ, Sebunya TK, Castro-Nallar E, McLane MF, Musonda R, Gashe BA, Novitsky V, Essex M
2013-03-15

Adaptive evolution of multiple traits through multiple mutations at a single gene.

Science (New York, N.Y.)
Linnen CR, Poh YP, Peterson BK, Barrett RD, Larson JG, Jensen JD, Hoekstra HE
2013-03-15

The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity.

PLoS genetics
Levin BR, Moineau S, Bushman M, Barrangou R
2013-03-14

The effect of age and recent influenza vaccination history on the immunogenicity and efficacy of 2009-10 seasonal trivalent inactivated influenza vaccination in children.

PloS one
Ng S, Ip DK, Fang VJ, Chan KH, Chiu SS, Leung GM, Peiris JS, Cowling BJ
2013-03-12

MIDAS