Papers

Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements.

Biometrics
Xu J, Guttorp P, Kato-Maeda M, Minin VN
2015-07-08

Epidemic Wave Dynamics Attributable to Urban Community Structure: A Theoretical Characterization of Disease Transmission in a Large Network.

Journal of medical Internet research
Hoen AG, Hladish TJ, Eggo RM, Lenczner M, Brownstein JS, Meyers LA
2015-07-08

Limits and patterns of cytomegalovirus genomic diversity in humans.

Proceedings of the National Academy of Sciences of the United States of America
Renzette N, Pokalyuk C, Gibson L, Bhattacharjee B, Schleiss MR, Hamprecht K, Yamamoto AY, Mussi-Pinhata MM, Britt WJ, Jensen JD, Kowalik TF
2015-07-08

Dynamics of the Human Infectious Reservoir for Malaria Determined by Mosquito Feeding Assays and Ultrasensitive Malaria Diagnosis in Burkina Faso.

The Journal of infectious diseases
Ouédraogo AL, Gonçalves BP, Gnémé A, Wenger EA, Guelbeogo MW, Ouédraogo A, Gerardin J, Bever CA, Lyons H, Pitroipa X, Verhave JP, Eckhoff PA, Drakeley C, Sauerwein R, Luty AJ, Kouyaté B, Bousema T
2015-07-05

Putative precipitating factors for hepatic encephalopathy in dogs: 118 cases (1991-2014).

Journal of the American Veterinary Medical Association
Lidbury JA, Ivanek R, Suchodolski JS, Steiner JM
2015-07-03

“Crude Vaccine Effectiveness” Is a Misleading Term in Test-negative Studies of Influenza Vaccine Effectiveness.

Epidemiology (Cambridge, Mass.)
Sullivan SG, Cowling BJ
2015-07-02

Brief Report: Incubation Period Duration and Severity of Clinical Disease Following Severe Acute Respiratory Syndrome Coronavirus Infection.

Epidemiology (Cambridge, Mass.)
Virlogeux V, Fang VJ, Wu JT, Ho LM, Peiris JS, Leung GM, Cowling BJ
2015-07-02

Review Article: The Fraction of Influenza Virus Infections That Are Asymptomatic: A Systematic Review and Meta-analysis.

Epidemiology (Cambridge, Mass.)
Leung NH, Xu C, Ip DK, Cowling BJ
2015-07-02

Vaccine against Pneumococcal Pneumonia in Adults.

The New England journal of medicine
Weinberger DM, Bruhn CA, Shapiro ED
2015-07-02

Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae.

PLoS pathogens
Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MC, Gupta S
2015-07-01

Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa.

PLoS computational biology
Wesolowski A, O’Meara WP, Eagle N, Tatem AJ, Buckee CO
2015-07-01

Economic Evaluation of Fungal Meningitis Outbreak Response in New River Valley: Local Health Department Perspective.

Frontiers in public health services & systems research
Abbas KM, Dorratoltaj N, O’Dell ML, Bordwine P, Kerkering TM, Redican KJ
2015-07-01

Good laboratory practice for clinical next-generation sequencing informatics pipelines.

Nature biotechnology
Gargis AS, Kalman L, Bick DP, da Silva C, Dimmock DP, Funke BH, Gowrisankar S, Hegde MR, Kulkarni S, Mason CE, Nagarajan R, Voelkerding KV, Worthey EA, Aziz N, Barnes J, Bennett SF, Bisht H, Church DM, Dimitrova Z, Gargis SR, Hafez N, Hambuch T, Hyland FC, Luna RA, MacCannell D, Mann T, McCluskey MR, McDaniel TK, Ganova-Raeva LM, Rehm HL, Reid J, Campo DS, Resnick RB, Ridge PG, Salit ML, Skums P, Wong LJ, Zehnbauer BA, Zook JM, Lubin IM
2015-07-01

T-cell exhaustion, co-stimulation and clinical outcome in autoimmunity and infection.

Nature
McKinney EF, Lee JC, Jayne DR, Lyons PA, Smith KG
2015-07-01

Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing.

Uncertainty in artificial intelligence : proceedings of the … conference. Conference on Uncertainty in Artificial Intelligence
Xu J, Minin VN
2015-07-01

Forecasting Influenza Epidemics in Hong Kong.

PLoS computational biology
Yang W, Cowling BJ, Lau EH, Shaman J
2015-07-01

Technology, innovation and health equity.

Bulletin of the World Health Organization
Fong H, Harris E
2015-07-01

Targeting Transmission Pathways for Emerging Zoonotic Disease Surveillance and Control.

Vector borne and zoonotic diseases (Larchmont, N.Y.)
Loh EH, Zambrana-Torrelio C, Olival KJ, Bogich TL, Johnson CK, Mazet JA, Karesh W, Daszak P
2015-07-01

Development of a relative risk model for drinking water regulation and design recommendations for a peri urban region of Argentina

International Journal of Hygiene and Environmental Health
María Soledad Rodriguez-Alvarez, Mark H Weir, Joanna M Pope, Lucas Seghezzo, Verónica B Rajal, María Mónica Salusso, Liliana B Morana
2015-06-30

The effect of sexually transmitted co-infections on HIV viral load amongst individuals on antiretroviral therapy: a systematic review and meta-analysis.

BMC infectious diseases
Champredon D, Bellan SE, Delva W, Hunt S, Shi CF, Smieja M, Dushoff J
2015-06-30

MIDAS