Papers

Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa.

Science (New York, N.Y.)
Pulliam JRC, van Schalkwyk C, Govender N, von Gottberg A, Cohen C, Groome MJ, Dushoff J, Mlisana K, Moultrie H
2022-03-15

Developing a COVID-19 WHO Clinical Progression Scale Inpatient Database from Electronic Health Record Data.

Journal of the American Medical Informatics Association : JAMIA
Ramaswamy P, Gong JJ, Saleh SN, McDonald SA, Blumberg S, Medford RJ, Liu X
2022-03-15

On the accuracy of short-term COVID-19 fatality forecasts.

BMC infectious diseases
Antulov-Fantulin N, Böttcher L
2022-03-14

Bayesian latent class models for identifying canine visceral leishmaniosis using diagnostic tests in the absence of a gold standard.

PLoS neglected tropical diseases
Ozanne MV, Brown GD, Scorza BM, Mahachi K, Toepp AJ, Petersen CA
2022-03-14

SARS-CoV-2 incidence, transmission, and reinfection in a rural and an urban setting: results of the PHIRST-C cohort study, South Africa, 2020-21.

The Lancet. Infectious diseases
Cohen C, Kleynhans J, von Gottberg A, McMorrow ML, Wolter N, Bhiman JN, Moyes J, du Plessis M, Carrim M, Buys A, Martinson NA, Kahn K, Tollman S, Lebina L, Wafawanaka F, du Toit JD, Gómez-Olivé FX, Dawood FS, Mkhencele T, Sun K, Viboud C, Tempia S,
2022-03-14

Telehealth Services for Substance Use Disorders During the COVID-19 Pandemic: Longitudinal Assessment of Intensive Outpatient Programming and Data Collection Practices.

JMIR mental health
Gliske K, Welsh JW, Braughton JE, Waller LA, Ngo QM
2022-03-14

Multiscale Model of Antiviral Timing, Potency, and Heterogeneity Effects on an Epithelial Tissue Patch Infected by SARS-CoV-2.

Viruses
Ferrari Gianlupi J, Mapder T, Sego TJ, Sluka JP, Quinney SK, Craig M, Stratford RE Jr., Glazier JA
2022-03-14

Interactions among common non-SARS-CoV-2 respiratory viruses and influence of the COVID-19 pandemic on their circulation in New York City.

Influenza and other respiratory viruses
Yuan H, Yeung A, Yang W
2022-03-12

Percolation across households in mechanistic models of non-pharmaceutical interventions in SARS-CoV-2 disease dynamics.

Epidemics
Franco C, Ferreira LS, Sudbrack V, Borges ME, Poloni S, Prado PI, White LJ, Águas R, Kraenkel RA, Coutinho RM
2022-03-12

Epidemiological Consequences of Viral Interference: A Mathematical Modeling Study of Two Interacting Viruses.

Frontiers in microbiology
Pinky L, Dobrovolny HM
2022-03-11

The changing epidemiology of SARS-CoV-2.

Science (New York, N.Y.)
Koelle K, Martin MA, Antia R, Lopman B, Dean NE
2022-03-11

Protecting the herd with vaccination.

Science (New York, N.Y.)
Dean NE, Halloran ME
2022-03-11

Estimating the burden of adult hospitalized RSV infection using local and state data – methodology.

Human vaccines & immunotherapeutics
Balasubramani GK, Nowalk MP, Eng H, Zimmerman RK
2022-03-11

A guide to backward paper writing for the data sciences.

Patterns (New York, N.Y.)
Zelner J, Broen K, August E
2022-03-11

Incorporating the mutational landscape of SARS-COV-2 variants and case-dependent vaccination rates into epidemic models.

Infectious Disease Modelling
Chowdhury MM, Islam MR, Hossain MS, Tabassum N, Peace A
2022-03-11

Predicting the onset of hypertension for workers: does including work characteristics improve risk predictive accuracy?

Journal of human hypertension
Chantarat T, McGovern PM, Enns EA, Hardeman RR
2022-03-11

Cost-effectiveness of fecal microbiota transplantation for first recurrent Clostridioides difficile infection.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Aby ES, Vaughn BP, Enns EA, Rajasingham R
2022-03-11

Author Correction: Fine-scale heterogeneity in population density predicts wave dynamics in dengue epidemics.

Nature communications
Romeo-Aznar V, Picinini Freitas L, Gonçalves Cruz O, King AA, Pascual M
2022-03-11

A study of SARS-COV-2 outbreaks in US federal prisons: the linkage between staff, incarcerated populations, and community transmission.

BMC public health
Towers S, Wallace D, Walker J, Eason JM, Nelson JR, Grubesic TH
2022-03-11

Modeling hepatitis C micro-elimination among people who inject drugs with direct-acting antivirals in metropolitan Chicago.

PloS one
Tatara E, Gutfraind A, Collier NT, Echevarria D, Cotler SJ, Major ME, Ozik J, Dahari H, Boodram B
2022-03-10

MIDAS