Papers

Forecasting the spatial transmission of influenza in the United States.

Proceedings of the National Academy of Sciences of the United States of America
Pei S, Kandula S, Yang W, Shaman J
2018-03-13

Asymptomatic Summertime Shedding of Respiratory Viruses.

The Journal of infectious diseases
Shaman J, Morita H, Birger R, Boyle M, Comito D, Lane B, Ligon C, Smith H, Desalle R, Planet P
2018-03-13

Determining whether a class of random graphs is consistent with an observed contact network.

Journal of theoretical biology
Nath M, Ren Y, Khorramzadeh Y, Eubank S
2018-03-07

Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010-2014.

Proceedings of the National Academy of Sciences of the United States of America
Lauer SA, Sakrejda K, Ray EL, Keegan LT, Bi Q, Suangtho P, Hinjoy S, Iamsirithaworn S, Suthachana S, Laosiritaworn Y, Cummings DAT, Lessler J, Reich NG
2018-03-06

Immune Responses to Twice-Annual Influenza Vaccination in Older Adults in Hong Kong.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Tam YH, Valkenburg SA, Perera RAPM, Wong JHF, Fang VJ, Ng TWY, Kwong ASK, Tsui WWS, Ip DKM, Poon LLM, Chau CKV, Barr IG, Peiris JSM, Cowling BJ
2018-03-05

Waxing Understanding of Waning Immunity.

The Journal of infectious diseases
Lopman BA, Pitzer VE
2018-03-05

Use of Genome Sequencing to Define Institutional Influenza Outbreaks, Toronto, Ontario, Canada, 2014-15.

Emerging infectious diseases
MacFadden DR, McGeer A, Athey T, Perusini S, Olsha R, Li A, Eshaghi A, Gubbay JB, Hanage WP
2018-03-01

Use of temperature to improve West Nile virus forecasts.

PLoS computational biology
DeFelice NB, Schneider ZD, Little E, Barker C, Caillouet KA, Campbell SR, Damian D, Irwin P, Jones HMP, Townsend J, Shaman J
2018-03-01

Using data-driven agent-based models for forecasting emerging infectious diseases.

Epidemics
Venkatramanan S, Lewis B, Chen J, Higdon D, Vullikanti A, Marathe M
2018-03-01

Weak Epistasis May Drive Adaptation in Recombining Bacteria.

Genetics
Arnold BJ, Gutmann MU, Grad YH, Sheppard SK, Corander J, Lipsitch M, Hanage WP
2018-03-01

Pandemic preparedness and forecast.

Nature microbiology
Shaman J
2018-03-01

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.

Molecular biology and evolution
Wymant C, Hall M, Ratmann O, Bonsall D, Golubchik T, de Cesare M, Gall A, Cornelissen M, Fraser C,
2018-03-01

A simple approach to measure transmissibility and forecast incidence.

Epidemics
Nouvellet P, Cori A, Garske T, Blake IM, Dorigatti I, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Van Kerkhove MD, Fraser C, Donnelly CA, Ferguson NM, Riley S
2018-03-01

Application of the CDC EbolaResponse Modeling tool to disease predictions.

Epidemics
Gaffey RH, Viboud C
2018-03-01

Are the London Declaration’s 2020 goals sufficient to control Chagas disease?: Modeling scenarios for the Yucatan Peninsula.

PLoS neglected tropical diseases
Lee BY, Bartsch SM, Skrip L, Hertenstein DL, Avelis CM, Ndeffo-Mbah M, Tilchin C, Dumonteil EO, Galvani A
2018-03-01

Cost-Effectiveness of Antibiotic Prophylaxis Strategies for Transrectal Prostate Biopsy in an Era of Increasing Antimicrobial Resistance.

Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research
Lee K, Drekonja DM, Enns EA
2018-03-01

MIDAS