Papers

Genome-wide association study identifies distinct genetic contributions to prognosis and susceptibility in Crohn’s disease.

Nature genetics
Lee JC, Biasci D, Roberts R, Gearry RB, Mansfield JC, Ahmad T, Prescott NJ, Satsangi J, Wilson DC, Jostins L, Anderson CA, , Traherne JA, Lyons PA, Parkes M, Smith KG
2017-01-10

Hadza sleep biology: Evidence for flexible sleep-wake patterns in hunter-gatherers.

American journal of physical anthropology
Samson DR, Crittenden AN, Mabulla IA, Mabulla AZ, Nunn CL
2017-01-08

Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening.

Proceedings of the National Academy of Sciences of the United States of America
Croucher NJ, Campo JJ, Le TQ, Liang X, Bentley SD, Hanage WP, Lipsitch M
2017-01-06

Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa.

PloS one
Verma M, Erwin S, Abedi V, Hontecillas R, Hoops S, Leber A, Bassaganya-Riera J, Ciupe SM
2017-01-06

Correction: Impact of Age and Sex on CD4+ Cell Count Trajectories following Treatment Initiation: An Analysis of the Tanzanian HIV Treatment Database.

PLoS One
Means AR, Risher KA, Ujeneza EL, Maposa I, Nondi J, Bellan SE
2017-01-06

Antibiotic stress selects against cooperation in the pathogenic bacterium Pseudomonas aeruginosa.

Proceedings of the National Academy of Sciences of the United States of America
Vasse M, Noble RJ, Akhmetzhanov AR, Torres-Barceló C, Gurney J, Benateau S, Gougat-Barbera C, Kaltz O, Hochberg ME
2017-01-05

Defining Surrogate Endpoints for Clinical Trials in Severe Falciparum Malaria

PLoS ONE
Atthanee Jeeyapant, Hugh W Kingston, Katherine Plewes, Richard J Maude, Josh Hanson, M Trent Herdman, Stije J Leopold, Thatsanun Ngernseng, Prakaykaew Charunwatthana, Nguyen Hoan Phu, Aniruddha Ghose, M Mahtab Uddin Hasan, Caterina I Fanello, Md Abul Faiz, Tran Tinh Hien, Nicholas PJ Day, Nicholas J White, Arjen M Dondorp
2017-01-04

Livestock Ownership Among Rural Households and Child Morbidity and Mortality: An Analysis of Demographic Health Survey Data from 30 Sub-Saharan African Countries (2005-2015).

The American journal of tropical medicine and hygiene
Kaur M, Graham JP, Eisenberg JNS
2017-01-04

Local alignment vectors reveal cancer cell-induced ECM fiber remodeling dynamics.

Scientific reports
Lee B, Konen J, Wilkinson S, Marcus AI, Jiang Y
2017-01-03

Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies.

PLoS computational biology
Abel Zur Wiesch P, Clarelli F, Cohen T
2017-01-01

Bolstering Community Cooperation in Ebola Resurgence Protocols: Combining Field Blood Draw and Point-of-Care Diagnosis.

PLoS medicine
Fallah MP, Skrip LA, Raftery P, Kullie M, Borbor W, Laney AS, Blackley DJ, Christie A, Dokubo EK, Lo TQ, Coulter S, Baller A, Vonhm BT, Bemah P, Lomax S, Yeiah A, Wapoe-Sackie Y, Mann J, Clement P, Davies-Wayne G, Hamblion E, Wolfe C, Williams D, Gasasira A, Kateh F, Nyenswah TG, Galvani AP
2017-01-01

A systems approach to obesity.

Nutrition reviews
Lee BY, Bartsch SM, Mui Y, Haidari LA, Spiker ML, Gittelsohn J
2017-01-01

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

Molecular biology and evolution
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C,
2017-01-01

Defining the Risk of Zika and Chikungunya Virus Transmission in Human Population Centers of the Eastern United States.

PLoS neglected tropical diseases
Manore CA, Ostfeld RS, Agusto FB, Gaff H, LaDeau SL
2017-01-01

Evaluating Hospital-Based Surveillance for Outbreak Detection in Bangladesh: Analysis of Healthcare Utilization Data.

PLoS medicine
Nikolay B, Salje H, Sturm-Ramirez K, Azziz-Baumgartner E, Homaira N, Ahmed M, Iuliano AD, Paul RC, Rahman M, Hossain MJ, Luby SP, Cauchemez S, Gurley ES
2017-01-01

Use of personal protective equipment among health care personnel: Results of clinical observations and simulations.

American Journal of Infection Control
Kang J, O’Donnell JM, Colaianne B, Bircher N, Ren D, Smith KJ
2017-01-01

Efficient Data Augmentation for Fitting Stochastic Epidemic Models to Prevalence Data.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America
Fintzi J, Cui X, Wakefield J, Minin VN
2017-01-01

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

PLoS computational biology
Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B
2017-01-01

A direct LU solver for pricing American bond options under HullWhite model

Journal of Computational and Applied Mathematics
Antonio Falcó, Ll Navarro, Carlos Vázquez
2017-01-01

The Clinical Trials Mosaic: Toward a Range of Clinical Trials Designs to Optimize Evidence-Based Treatment

Journal for Person-Oriented Research
Ty A Ridenour, Szu-Han K Chen, Hsin-Yi Liu, Georgiy V Bobashev, Katherine Hill, Rory Cooper
2017-01-01

MIDAS