Papers

Clinical characteristics and predictors of outcomes of hospitalized patients with COVID-19 in a multi-ethnic London NHS Trust: a retrospective cohort study.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Perez-Guzman PN, Daunt A, Mukherjee S, Crook P, Forlano R, Kont MD, Løchen A, Vollmer M, Middleton P, Judge R, Harlow C, Soubieres A, Cooke G, White PJ, Hallett TB, Aylin P, Ferguson N, Hauck K, Thursz MR, Nayagam S
2020-08-07

Spatial modes for transmission of chikungunya virus during a large chikungunya outbreak in Italy: a modeling analysis.

BMC medicine
Guzzetta G, Vairo F, Mammone A, Lanini S, Poletti P, Manica M, Rosa R, Caputo B, Solimini A, Torre AD, Scognamiglio P, Zumla A, Ippolito G, Merler S
2020-08-07

A Novel HIV-1 RNA Testing Intervention to Detect Acute and Prevalent HIV Infection in Young Adults and Reduce HIV Transmission in Kenya: Protocol for a Randomized Controlled Trial.

JMIR research protocols
Graham SM, Agutu C, van der Elst E, Hassan AS, Gichuru E, Mugo PM, Farquhar C, Babigumira JB, Goodreau SM, Hamilton DT, Ndung’u T, Sirengo M, Chege W, Sanders EJ
2020-08-07

Thermal thresholds heighten sensitivity of West Nile virus transmission to changing temperatures in coastal California.

Proceedings. Biological sciences
Skaff NK, Cheng Q, Clemesha RES, Collender PA, Gershunov A, Head JR, Hoover CM, Lettenmaier DP, Rohr JR, Snyder RE, Remais JV
2020-08-06

Health-care seeking behavior for respiratory illness among Flu Near You participants in the United States during the 2015-16 through 2018-19 influenza season.

The Journal of infectious diseases
Baltrusaitis K, Reed C, Sewalk K, Brownstein JS, Crawley AW, Biggerstaff M
2020-08-06

Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19.

Nature human behaviour
Aleta A, Martín-Corral D, Pastore Y Piontti A, Ajelli M, Litvinova M, Chinazzi M, Dean NE, Halloran ME, Longini IM Jr., Merler S, Pentland A, Vespignani A, Moro E, Moreno Y
2020-08-05

Contextual, Social and Epidemiological Characteristics of the Ebola Virus Disease Outbreak in Likati Health Zone, Democratic Republic of the Congo, 2017.

Frontiers in public health
Grimes KEL, Ngoyi BF, Stolka KB, Hemingway-Foday JJ, Lubula L, Mossoko M, Okitandjate A, MacDonald PDM, Nelson A, Rhea S, Ilunga BK
2020-08-04

Initial Patterns of Prescription Opioid Supply and Risk of Mortality Among Insured Adults in the United States.

Journal of addiction medicine
Aroke HA, Buchanan AL, Bratberg J, Hogan JW, Rich JD, Wen X, Kogut SJ
2020-08-04

Lung-Specific Risk Factors Associated With Incident Hip Fracture in Current and Former Smokers.

Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research
Bon J, Nouraie SM, Smith KJ, Dransfield MT, McDonald ML, Hoffman EA, Newell JD Jr., Comellas AP, Saha PK, Bowler RP, Regan EA
2020-08-04

Finding a path to reopen schools during the COVID-19 pandemic.

The Lancet. Child & adolescent health
Edmunds WJ
2020-08-03

Acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-PE) carriage after exposure to systemic antimicrobials during travel: Systematic review and meta-analysis.

Travel medicine and infectious disease
Wuerz TC, Kassim SS, Atkins KE
2020-08-02

Managing disease outbreaks: The importance of vector mobility and spatially heterogeneous control.

PLoS computational biology
Demers J, Bewick S, Agusto F, Caillouët KA, Fagan WF, Robertson SL
2020-08-01

Age-specific SARS-CoV-2 infection fatality ratio and associated risk factors, Italy, February to April 2020.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin
Poletti P, Tirani M, Cereda D, Trentini F, Guzzetta G, Marziano V, Buoro S, Riboli S, Crottogini L, Piccarreta R, Piatti A, Grasselli G, Melegaro A, Gramegna M, Ajelli M, Merler S
2020-08-01

From Causal Loop Diagrams to System Dynamics Models in a Data-Rich Ecosystem

Leveraging Data Science for Global Health
Gary Lin, Michele Palopoli, Viva Dadwal
2020-08-01

Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones.

PLoS computational biology
Clarelli F, Palmer A, Singh B, Storflor M, Lauksund S, Cohen T, Abel S, Abel Zur Wiesch P
2020-08-01

Individual model forecasts can be misleading, but together they are useful.

European journal of epidemiology
Buckee CO, Johansson MA
2020-08-01

Uses of pathogen detection data to estimate vaccine direct effects in case-control studies.

Journal of the Royal Society, Interface
Lewnard JA
2020-08-01

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics.

PLoS pathogens
Baker D, van den Beek M, Blankenberg D, Bouvier D, Chilton J, Coraor N, Coppens F, Eguinoa I, Gladman S, Grüning B, Keener N, Larivière D, Lonie A, Kosakovsky Pond S, Maier W, Nekrutenko A, Taylor J, Weaver S
2020-08-01

Multi-model forecasts of the ongoing Ebola epidemic in the Democratic Republic of Congo, March-October 2019.

Journal of the Royal Society, Interface
Roosa K, Tariq A, Yan P, Hyman JM, Chowell G
2020-08-01

Incidence and etiology of clinically-attended, antibiotic-treated diarrhea among children under five years of age in low- and middle-income countries: Evidence from the Global Enteric Multicenter Study.

PLoS neglected tropical diseases
Lewnard JA, Rogawski McQuade ET, Platts-Mills JA, Kotloff KL, Laxminarayan R
2020-08-01

MIDAS