Papers

Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918.

Proceedings of the National Academy of Sciences of the United States of America
Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA
2016-11-29

Alignment-free Transcriptomic and Metatranscriptomic Comparison Using Sequencing Signatures with Variable Length Markov Chains.

Scientific reports
Liao W, Ren J, Wang K, Wang S, Zeng F, Wang Y, Sun F
2016-11-23

How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study.

Proceedings of the National Academy of Sciences of the United States of America
Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S
2016-11-22

Time series analysis of malaria in Afghanistan: using ARIMA models to predict future trends in incidence.

Malaria journal
Anwar MY, Lewnard JA, Parikh S, Pitzer VE
2016-11-22

Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York City and New Jersey, 1999-2009.

BMC Genomics
Brown TS, Narechania A, Walker JR, Planet PJ, Bifani PJ, Kolokotronis SO, Kreiswirth BN, Mathema B
2016-11-21

Different DNA End Configurations Dictate Which NHEJ Components Are Most Important for Joining Efficiency.

The Journal of biological chemistry
Chang HH, Watanabe G, Gerodimos CA, Ochi T, Blundell TL, Jackson SP, Lieber MR
2016-11-18

Optimal frequency of rabies vaccination campaigns in Sub-Saharan Africa.

Proceedings. Biological sciences
Bilinski AM, Fitzpatrick MC, Rupprecht CE, Paltiel AD, Galvani AP
2016-11-16

Vaccination strategies against respiratory syncytial virus.

Proceedings of the National Academy of Sciences of the United States of America
Yamin D, Jones FK, DeVincenzo JP, Gertler S, Kobiler O, Townsend JP, Galvani AP
2016-11-15

Timing and periodicity of influenza epidemics.

Proceedings of the National Academy of Sciences of the United States of America
Bjørnstad ON, Viboud C
2016-11-15

Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000-2013.

The Journal of infectious diseases
Grad YH, Harris SR, Kirkcaldy RD, Green AG, Marks DS, Bentley SD, Trees D, Lipsitch M
2016-11-15

Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining tuberculosis/HIV coepidemic.

AIDS (London, England)
Kunkel A, Crawford FW, Shepherd J, Cohen T
2016-11-13

Viral factors in influenza pandemic risk assessment.

Elife
Lipsitch M, Barclay W, Raman R, Russell CJ, Belser JA, Cobey S, Kasson PM, Lloyd-Smith JO, Maurer-Stroh S, Riley S, Beauchemin CA, Bedford T, Friedrich TC, Handel A, Herfst S, Murcia PR, Roche B, Wilke CO, Russell CA
2016-11-11

First flu is forever.

Science (New York, N.Y.)
Viboud C, Epstein SL
2016-11-11

Local variations in the timing of RSV epidemics.

BMC infectious diseases
Noveroske DB, Warren JL, Pitzer VE, Weinberger DM
2016-11-11

The hidden societal cost of antibiotic resistance per antibiotic prescribed in the United States: an exploratory analysis.

BMC Infectious Diseases
Michaelidis CI, Fine MJ, Lin CJ, Linder JA, Nowalk MP, Shields RK, Zimmerman RK, Smith KJ
2016-11-08

A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda.

Elife
Blanquart F, Grabowski MK, Herbeck J, Nalugoda F, Serwadda D, Eller MA, Robb ML, Gray R, Kigozi G, Laeyendecker O, Lythgoe KA, Nakigozi G, Quinn TC, Reynolds SJ, Wawer MJ, Fraser C
2016-11-05

Forecasting the opioid epidemic.

Science (New York, N.Y.)
Burke DS
2016-11-04

Using the 4 pillars™ practice transformation program to increase adult influenza vaccination and reduce missed opportunities in a randomized cluster trial.

BMC infectious diseases
Lin CJ, Nowalk MP, Pavlik VN, Brown AE, Zhang S, Raviotta JM, Moehling KK, Hawk M, Ricci EM, Middleton DB, Patel S, South-Paul JE, Zimmerman RK
2016-11-03

Did a Single Amino Acid Change Make Ebola Virus More Virulent

Cell
Bedford T, Malik HS
2016-11-03

Metagenomic Investigation of Plasma in Individuals with ME/CFS Highlights the Importance of Technical Controls to Elucidate Contamination and Batch Effects.

PloS one
Miller RR, Uyaguari-Diaz M, McCabe MN, Montoya V, Gardy JL, Parker S, Steiner T, Hsiao W, Nesbitt MJ, Tang P, Patrick DM,
2016-11-02

MIDAS