Papers

HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens.

Molecular biology and evolution
Kosakovsky Pond SL, Weaver S, Leigh Brown AJ, Wertheim JO
2018-02-06

Impact of a Hypothetical Infectious Disease Outbreak on US Exports and Export-Based Jobs.

Health security
Bambery Z, Cassell CH, Bunnell RE, Roy K, Ahmed Z, Payne RL, Meltzer MI
2018-02-06

Epidemic spreading in modular time-varying networks.

Scientific reports
Nadini M, Sun K, Ubaldi E, Starnini M, Rizzo A, Perra N
2018-02-05

Waxing Understanding of Waning Immunity.

The Journal of infectious diseases
Lopman BA, Pitzer VE
2018-02-03

Temporal Relationship Between Healthcare-Associated and Nonhealthcare-Associated Norovirus Outbreaks and Google Trends Data in the United States.

Infection control and hospital epidemiology
Osuka H, Hall AJ, Wikswo ME, Baker JM, Lopman BA
2018-02-01

Prolonging herd immunity to cholera via vaccination: Accounting for human mobility and waning vaccine effects.

PLoS neglected tropical diseases
Peak CM, Reilly AL, Azman AS, Buckee CO
2018-02-01

On data processing required to derive mobility patterns from passively-generated mobile phone data.

Transportation research. Part C, Emerging technologies
Wang F, Chen C
2018-02-01

Approximate Bayesian computation for spatial SEIR(S) epidemic models.

Spatial and spatio-temporal epidemiology
Brown GD, Porter AT, Oleson JJ, Hinman JA
2018-02-01

Spatial and temporal dynamics of malaria in Madagascar.

Malaria journal
Ihantamalala FA, Rakotoarimanana FMJ, Ramiadantsoa T, Rakotondramanga JM, Pennober G, Rakotomanana F, Cauchemez S, Metcalf CJE, Herbreteau V, Wesolowski A
2018-02-01

When are pathogen genome sequences informative of transmission events?

PLoS pathogens
Campbell F, Strang C, Ferguson N, Cori A, Jombart T
2018-02-01

Deep sequencing of HBV pre-S region reveals high heterogeneity of HBV genotypes and associations of word pattern frequencies with HCC.

PLoS genetics
Bai X, Jia JA, Fang M, Chen S, Liang X, Zhu S, Zhang S, Feng J, Sun F, Gao C
2018-02-01

Interim estimate of influenza vaccine effectiveness in hospitalised children, Hong Kong, 2017/18.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin
Chiu SS, Kwan MYW, Feng S, Wong JSC, Leung CW, Chan ELY, Peiris JSM, Cowling BJ
2018-02-01

Clinical Age-Specific Seasonal Conjunctivitis Patterns and Their Online Detection in Twitter, Blog, Forum, and Comment Social Media Posts.

Investigative ophthalmology & visual science
Deiner MS, McLeod SD, Chodosh J, Oldenburg CE, Fathy CA, Lietman TM, Porco TC
2018-02-01

Prediction of infectious disease epidemics via weighted density ensembles.

PLoS computational biology
Ray EL, Reich NG
2018-02-01

Pneumococcal Phenotype and Interaction with Nontypeable Haemophilus influenzae as Determinants of Otitis Media Progression.

Infection and immunity
Lewnard JA, Givon-Lavi N, Tähtinen PA, Dagan R
2018-01-31

Impact of stochastically generated heterogeneity in hazard rates on individually randomized vaccine efficacy trials.

Clinical trials (London, England)
Kahn R, Hitchings M, Bellan S, Lipsitch M
2018-01-30

Resilience management during large-scale epidemic outbreaks.

Scientific reports
Massaro E, Ganin A, Perra N, Linkov I, Vespignani A
2018-01-30

Underestimation of the global burden of schistosomiasis.

Lancet (London, England)
King CH, Galvani AP
2018-01-27

Moving Forward With Treatment of Gonorrhea for Users of Human Immunodeficiency Virus Preexposure Prophylaxis Given the Threat of Antimicrobial Resistance.

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Jenness SM, Weiss KM, Goodreau SM, Gift T, Chesson H, Hoover KW, Smith DK, Liu AY, Sullivan PS, Rosenberg ES
2018-01-26

Predicting non-melanoma skin cancer via a multi-parameterized artificial neural network.

Scientific reports
Roffman D, Hart G, Girardi M, Ko CJ, Deng J
2018-01-26

MIDAS