Papers

Phylodynamic analysis to inform prevention efforts in mixed HIV epidemics.

Virus evolution
Volz EM, Ndembi N, Nowak R, Kijak GH, Idoko J, Dakum P, Royal W, Baral S, Dybul M, Blattner WA, Charurat M
2017-07-01

Correction: Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis.

PLoS computational biology
Brouwer AF, Meza R, Eisenberg MC
2017-07-01

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

PLoS biology
Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C,
2017-07-01

Speciation trajectories in recombining bacterial species.

PLoS computational biology
Marttinen P, Hanage WP
2017-07-01

Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

PLoS Pathogens
Bell SM, Bedford T
2017-07-01

HTM Departments Should Operate like a Business.

Biomedical instrumentation & technology
Cohen T
2017-07-01

Experimental adaptation of human echovirus 11 to ultraviolet radiation leads to resistance to disinfection and ribavirin.

Virus evolution
Carratalà A, Shim H, Zhong Q, Bachmann V, Jensen JD, Kohn T
2017-07-01

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses.

Bulletin of the World Health Organization
Chang HH, Huber RG, Bond PJ, Grad YH, Camerini D, Maurer-Stroh S, Lipsitch M
2017-07-01

The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution.

Genome biology and evolution
Ormond L, Liu P, Matuszewski S, Renzette N, Bank C, Zeldovich K, Bolon DN, Kowalik TF, Finberg RW, Jensen JD, Wang JP
2017-07-01

Mosquitoes on a plane: Disinsection will not stop the spread of vector-borne pathogens, a simulation study.

PLoS neglected tropical diseases
Mier-Y-Teran-Romero L, Tatem AJ, Johansson MA
2017-07-01

Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals.

PLoS neglected tropical diseases
Siraj AS, Oidtman RJ, Huber JH, Kraemer MUG, Brady OJ, Johansson MA, Perkins TA
2017-07-01

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.

Microbial genomics
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G
2017-06-30

Rural and urban injection drug use in Puerto Rico: Network implications for human immunodeficiency virus and hepatitis C virus infection.

Journal of ethnicity in substance abuse
Thrash C, Welch-Lazoritz M, Gauthier G, Khan B, Abadie R, Dombrowski K, De Leon SM, Rolon Colon Y
2017-06-30

Recent advances in understanding the adaptive immune response to Zika virus and the effect of previous flavivirus exposure.

Virus research
Andrade DV, Harris E
2017-06-29

Early antiretroviral therapy and potent second-line drugs could decrease HIV incidence of drug resistance.

Proceedings. Biological sciences
Shen M, Xiao Y, Rong L, Meyers LA, Bellan SE
2017-06-28

Monitoring the Path to the Elimination of Infectious Diseases.

Tropical medicine and infectious disease
Drake JM, Hay SI
2017-06-26

Estimating Influenza Vaccine Effectiveness With the Test-Negative Design Using Alternative Control Groups: A Systematic Review and Meta-Analysis.

American journal of epidemiology
Feng S, Cowling BJ, Kelly H, Sullivan SG
2017-06-24

Full-genome amplification and sequencing of Zika viruses using a targeted amplification approach.

Journal of virological methods
Leguia M, Cruz CD, Felices V, Torre A, Troncos G, Espejo V, Guevara C, Mores C
2017-06-22

Seropositivity to non-vaccine incorporated genotypes induced by the bivalent and quadrivalent HPV vaccines: A systematic review and meta-analysis.

Vaccine
Bissett SL, Godi A, Jit M, Beddows S
2017-06-22

Survival of Escherichia coli on Lettuce under Field Conditions Encountered in the Northeastern United States.

Journal of food protection
Weller DL, Kovac J, Roof S, Kent DJ, Tokman JI, Kowalcyk B, Oryang D, Ivanek R, Aceituno A, Sroka C, Wiedmann M
2017-06-21

MIDAS