National Institutes of Health, National Institute of General Medical Sciences
People: Caroline Buckee
2017 – 2022 Continue Reading New approaches to measuring and containing the spatial spread of human pathogens
National Institutes of Health, National Institute of General Medical Sciences
People: Caroline Buckee
2013 – 2016 Continue Reading An alignment free network approach to analyzing highly recombinant malaria parasi
National Institutes of Health, National Institute of General Medical Sciences
People: Laura White, Ted Cohen, William Hanage, Ben Cowling, Tyler Brown, Joseph Wu, Joseph Lewnard, Aimee Taylor, Pablo Martinez de Salazar, Lerato Magosi, Mauricio Santillana, Christine Tedijanto, Tigist Menkir, Sze Man Leung, Hsiao-Han Chang, Caroline Buckee, Pamela Martinez, Marc Lipsitch
2009 – 2021 Continue Reading Understanding and controlling antibiotic resistance
Plucinski MM, Wesolowski A, Gerlovina I, Taylor AR, Briggs J, Aranda-Díaz A, Golumbeanu M, Bajic M, Bailey JA, Barratt JLN, Buckee C, Deme AB, Felger I, Ghansah A, Hastings I, Kattenberg JH, Mayor A, Menard D, Moriarty LF, Neafsey D, Okell L, Oyier I, Raman J, Rosenthal PJ, Rosanas-Urgell A, Verity R, Volkman SK, Nsanzabana C, Greenhouse B. (2026). Target product profiles of laboratory and data analytical frameworks for genotyping to monitor antimalarial efficacy. PLOS global public health, 6(5)
Bangelesa F, Akilimali P, Hosner R, Buckee C, Shoemaker TR, Kaba D. (2026). Population mobility and Ebola case containment in Ituri, DR Congo. Lancet, 408(10550)
Bedi NS, Jia S, Buckee C, Schroeder A, Balsari S. (2025). Power Outages: Implications for California's Medically Vulnerable Population. Disaster medicine and public health preparedness, (19)
De Salazar PM, Parra-Salazar A, Niles-Robin R, Valz O, James K, Buckee CO, Cox H. (2025). Malaria spillover in Indigenous Guyanese communities following a crackdown on illegal gold mining in Brazil. Lancet regional health. Americas, (42)
LaVerriere E, Johnson ZM, Shieh M, Nziza N, Alter G, Buckee CO, Crompton PD, Traore B, Tran TM, Neafsey DE. (2025). Marked heterogeneity in malaria infection rate in a Malian longitudinal cohort. Nature communications, 16(1)
Mahmud AS, Chang MC, Citron DT, Engø-Monsen K, Sayeed AA, Zaman SI, Uddin D, Rahman MM, Rahaman M, Islam MN, Maude RJ, Buckee CO, Chang HH. (2025). Identifying malaria elimination strategies in the presence of human movement in Bangladesh. Communications medicine, 5(1)
Chin T, Johansson MA, Chowdhury A, Chowdhury S, Hosan K, Quader MT, Buckee CO, Mahmud AS. (2025). Bias in mobility datasets drives divergence in modeled outbreak dynamics. Communications medicine, 5(1)
Meade RD, González-Casabianca F, Rawal R, Venugopal V, Isaac T, Shaikh A, Wiskel T, Asrani S, Gadhvi D, Huybers PJ, Leaning J, Khanna T, Schrag DP, Buckee CO, Balsari S. (2025). Responding to rising heat in workplaces and homes of low income workers. BMJ (Clinical research ed.), (391)
Dankwa EA, Cavalli L, Balasubramanian R, Can MH, Cui H, Jia KM, Li Y, Ofori SK, Swartwood NA, Wade CG, Buckee CO, Imai-Eaton JW, Menzies NA. (2025). Calibration of transmission-dynamic infectious disease models: A scoping review and reporting framework. PLoS computational biology, 21(11)
Schwabl P, Camponovo F, Clementson C, Early AM, Laws M, Forero-Peña DA, Noya O, Grillet ME, Vanhove M, Anthony F, James K, Singh N, Cox H, Niles-Robin R, Buckee CO, Neafsey DE. (2024). Contrasting genomic epidemiology between sympatric Plasmodium falciparum and Plasmodium vivax populations. Nature communications, 15(1)
Ofori SK, Dankwa EA, Ngwakongnwi E, Amberbir A, Bekele A, Murray MB, Grad YH, Buckee CO, Hedt-Gauthier BL. (2024). Evidence-based Decision Making: Infectious Disease Modeling Training for Policymakers in East Africa. Annals of global health, 90(1)
Ofori SK, Dankwa EA, Estrada EH, Hua X, Kimani TN, Wade CG, Buckee CO, Murray MB, Hedt-Gauthier BL. (2024). COVID-19 vaccination strategies in Africa: A scoping review of the use of mathematical models to inform policy. Tropical medicine & international health : TM & IH
Menkir TF, Citarella BW, Sigfrid L, Doshi Y, Reyes LF, Calvache JA, Kildal AB, Nygaard AB, Holter JC, Panda PK, Jassat W, Merson L, Donnelly CA, Santillana M, Buckee C, Verguet S, Hejazi NS. (2024). Modeling the relative influence of socio-demographic variables on post-acute COVID-19 quality of life. medRxiv : the preprint server for health sciences
Vanhove M, Schwabl P, Clementson C, Early AM, Laws M, Anthony F, Florimond C, Mathieu L, James K, Knox C, Singh N, Buckee CO, Musset L, Cox H, Niles-Robin R, Neafsey DE. (2024). Temporal and spatial dynamics of Plasmodium falciparum clonal lineages in Guyana. PLoS pathogens, 20(6)
Camponovo F, Buckee CO, Taylor AR. (2023). Genomic framework for malaria parasites: challenging but necessary. Trends in parasitology, 39(4)
Brown T, de Salazar Munoz PM, Bhatia A, Bunda B, Williams EK, Bor D, Miller JS, Mohareb A, Thierauf J, Yang W, Villalba J, Naranbai V, Garcia Beltran W, Miller TE, Kress D, Stelljes K, Johnson K, Larremore D, Lennerz J, Iafrate AJ, Balsari S, Buckee C, Grad Y. (2023). Geographically skewed recruitment and COVID-19 seroprevalence estimates: a cross-sectional serosurveillance study and mathematical modelling analysis. BMJ open, 13(3)
De Salazar PM, Sosa-Estani S, Salvador F, Sulleiro E, Sánchez-Montalvá A, Ribeiro I, Molina I, Buckee CO. (2022). Human Trypanosoma cruzi chronic infection leads to individual level steady-state parasitemia: Implications for drug-trial optimization in Chagas disease. PLoS neglected tropical diseases, 16(11)
Carrasquilla M, Early AM, Taylor AR, Knudson Ospina A, Echeverry DF, Anderson TJC, Mancilla E, Aponte S, Cárdenas P, Buckee CO, Rayner JC, Sáenz FE, Neafsey DE, Corredor V. (2022). Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis. PLoS pathogens, 18(12)
Camponovo F, Buckee CO, Taylor AR. (2022). Measurably recombining malaria parasites. Trends in parasitology, 39(1)
Koplewitz G, Lu F, Clemente L, Buckee C, Santillana M. (2022). Predicting dengue incidence leveraging internet-based data sources. A case study in 20 cities in Brazil. PLoS neglected tropical diseases, 16(1)
Early AM, Camponovo F, Pelleau S, Cerqueira GC, Lazrek Y, Volney B, Carrasquilla M, de Thoisy B, Buckee CO, Childs LM, Musset L, Neafsey DE. (2022). Declines in prevalence alter the optimal level of sexual investment for the malaria parasite Plasmodium falciparum. Proceedings of the National Academy of Sciences of the United States of America, 119(30)
LaVerriere E, Schwabl P, Carrasquilla M, Taylor AR, Johnson ZM, Shieh M, Panchal R, Straub TJ, Kuzma R, Watson S, Buckee CO, Andrade CM, Portugal S, Crompton PD, Traore B, Rayner JC, Corredor V, James K, Cox H, Early AM, MacInnis BL, Neafsey DE. (2022). Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study. Molecular ecology resources
Brown TS, Robinson DA, Buckee CO, Mathema B. (2022). Connecting the dots: understanding how human mobility shapes TB epidemics. Trends in microbiology
Acosta RJ, Patnaik B, Buckee C, Kiang MV, Irizarry RA, Balsari S, Mahmud A. (2022). All-cause excess mortality across 90 municipalities in Gujarat, India, during the COVID-19 pandemic (March 2020-April 2021). PLOS global public health, 2(8)
Balsari S, Kiang MV, Buckee CO. (2021). Data in Crisis - Rethinking Disaster Preparedness in the United States. The New England journal of medicine
De Salazar PM, Cox H, Imhoff H, Alexandre JSF, Buckee CO. (2021). The association between gold mining and malaria in Guyana: a statistical inference and time-series analysis. The Lancet. Planetary health, 5(10)
Buckee C, Noor A, Sattenspiel L. (2021). Thinking clearly about social aspects of infectious disease transmission. Nature
Kiang MV, Chen JT, Krieger N, Buckee CO, Alexander MJ, Baker JT, Buckner RL, Coombs G 3rd., Rich-Edwards JW, Carlson KW, Onnela JP. (2021). Sociodemographic characteristics of missing data in digital phenotyping. Scientific reports, 11(1)
Chang MC, Kahn R, Li YA, Lee CS, Buckee CO, Chang HH. (2021). Variation in human mobility and its impact on the risk of future COVID-19 outbreaks in Taiwan. BMC public health, 21(1)
Mena GE, Martinez PP, Mahmud AS, Marquet PA, Buckee CO, Santillana M. (2021). Socioeconomic status determines COVID-19 incidence and related mortality in Santiago, Chile. Science (New York, N.Y.)
Kishore N, Kahn R, Martinez PP, de Salazar PM, Mahmud AS, Buckee CO. (2021). Lockdowns result in changes in human mobility which may impact the epidemiologic dynamics of SARS-CoV-2. Scientific reports, 11(1)
Brown TS, Engø-Monsen K, Kiang MV, Mahmud AS, Maude RJ, Buckee CO. (2021). The impact of mobility network properties on predicted epidemic dynamics in Dhaka and Bangkok. Epidemics, (35)
Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT. (2021). Reconstructing unseen transmission events to infer dengue dynamics from viral sequences. Nature communications, 12(1)
Stern RA, Mahmoudi N, Buckee CO, Schartup AT, Koutrakis P, Ferguson ST, Wolfson JM, Wofsy SC, Daube BC, Sunderland EM. (2021). The Microbiome of Size-Fractionated Airborne Particles from the Sahara Region. Environmental science & technology
Brown TS, Arogbokun O, Buckee CO, Chang HH. (2021). Distinguishing gene flow between malaria parasite populations. PLoS genetics, 17(12)
Mahmud AS, Chowdhury S, Sojib KH, Chowdhury A, Quader MT, Paul S, Saidy MS, Uddin R, Engø-Monsen K, Buckee CO. (2021). Participatory syndromic surveillance as a tool for tracking COVID-19 in Bangladesh. Epidemics, (35)
Meredith HR, Giles JR, Perez-Saez J, Mande T, Rinaldo A, Mutembo S, Kabalo EN, Makungo K, Buckee CO, Tatem AJ, Metcalf CJE, Wesolowski A. (2021). Characterizing human mobility patterns in rural settings of sub-Saharan Africa. eLife, (10)
Menkir TF, Cox H, Poirier C, Saul M, Jones-Weekes S, Clementson C, M de Salazar P, Santillana M, Buckee CO. (2021). A nowcasting framework for correcting for reporting delays in malaria surveillance. PLoS computational biology, 17(11)
Kiang MV, Santillana M, Chen JT, Onnela JP, Krieger N, Engø-Monsen K, Ekapirat N, Areechokchai D, Prempree P, Maude RJ, Buckee CO. (2021). Incorporating human mobility data improves forecasts of Dengue fever in Thailand. Scientific reports, 11(1)
Menkir TF, Chin T, Hay JA, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina MJ, Lipsitch M, Niehus R. (2021). Estimating internationally imported cases during the early COVID-19 pandemic. Nature communications, 12(1)
Jacob CG, Thuy-Nhien N, Mayxay M, Maude RJ, Quang HH, Hongvanthong B, Vanisaveth V, Ngo Duc T, Rekol H, van der Pluijm R, von Seidlein L, Fairhurst R, Nosten F, Hossain MA, Park N, Goodwin S, Ringwald P, Chindavongsa K, Newton P, Ashley E, Phalivong S, Maude R, Leang R, Huch C, Dong LT, Nguyen KT, Nhat TM, Hien TT, Nguyen H, Zdrojewski N, Canavati S, Sayeed AA, Uddin D, Buckee C, Fanello CI, Onyamboko M, Peto T, Tripura R, Amaratunga C, Myint Thu A, Delmas G, Landier J, Parker DM, Chau NH, Lek D, Suon S, Callery J, Jittamala P, Hanboonkunupakarn B, Pukrittayakamee S, Phyo AP, Smithuis F, Lin K, Thant M, Hlaing TM, Satpathi P, Satpathi S, Behera PK, Tripura A, Baidya S, Valecha N, Anvikar AR, Ul Islam A, Faiz A, Kunasol C, Drury E, Kekre M, Ali M, Love K, Rajatileka S, Jeffreys AE, Rowlands K, Hubbart CS, Dhorda M, Vongpromek R, Kotanan N, Wongnak P, Almagro Garcia J, Pearson RD, Ariani CV, Chookajorn T, Malangone C, Nguyen T, Stalker J, Jeffery B, Keatley J, Johnson KJ, Muddyman D, Chan XHS, Sillitoe J, Amato R, Simpson V, Gonçalves S, Rockett K, Day NP, Dondorp AM, Kwiatkowski DP, Miotto O. (2021). Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination. eLife, (10)
Gnangnon B, Duraisingh MT, Buckee CO. (2021). Deconstructing the parasite multiplication rate of Plasmodium falciparum. Trends in parasitology
Cowley LA, Afrad MH, Rahman SIA, Mamun MMA, Chin T, Mahmud A, Rahman MZ, Billah MM, Khan MH, Sultana S, Khondaker T, Baker S, Banik N, Alam AN, Mannoor K, Banu S, Chowdhury A, Flora MS, Thomson NR, Buckee CO, Qadri F, Shirin T. (2021). Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh. Nature microbiology
Brown TS, Martinez de Salazar Munoz P, Bhatia A, Bunda B, Williams EK, Bor D, Miller JS, Mohareb A, Naranbai V, Garcia Beltran W, Miller TE, Thierauf J, Yang W, Kress D, Stelljes K, Johnson K, Larremore DB, Lennerz J, Iafrate AJ, Balsari S, Buckee CO, Grad YH. (2021). GPS-estimated foot traffic data and venue selection for COVID-19 serosurveillance studies. medRxiv : the preprint server for health sciences
Larremore DB, Fosdick BK, Bubar KM, Zhang S, Kissler SM, Metcalf CJE, Buckee C, Grad YH. (2021). Estimating SARS-CoV-2 seroprevalence and epidemiological parameters with uncertainty from serological surveys. eLife, (10)
James LP, Salomon JA, Buckee CO, Menzies NA. (2021). The Use and Misuse of Mathematical Modeling for Infectious Disease Policymaking: Lessons for the COVID-19 Pandemic. Medical decision making : an international journal of the Society for Medical Decision Making
Holmdahl I, Kahn R, Hay JA, Buckee CO, Mina MJ. (2021). Estimation of Transmission of COVID-19 in Simulated Nursing Homes With Frequent Testing and Immunity-Based Staffing. JAMA network open, 4(5)
Mahmud AS, Kabir MI, Engø-Monsen K, Tahmina S, Riaz BK, Hossain MA, Khanom F, Rahman MM, Rahman MK, Sharmin M, Hossain DM, Yasmin S, Ahmed MM, Lusha MAF, Buckee CO. (2021). Megacities as drivers of national outbreaks: The 2017 chikungunya outbreak in Dhaka, Bangladesh. PLoS neglected tropical diseases, 15(2)
Chang HH, Chang MC, Kiang M, Mahmud AS, Ekapirat N, Engø-Monsen K, Sudathip P, Buckee CO, Maude RJ. (2021). Low parasite connectivity among three malaria hotspots in Thailand. Scientific reports, 11(1)
Kishore N, Taylor AR, Jacob PE, Vembar N, Cohen T, Buckee CO, Menzies NA. (2021). Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based study. The Lancet. Digital health
Kishore N, Kiang MV, Engø-Monsen K, Vembar N, Schroeder A, Balsari S, Buckee CO. (2020). Measuring mobility to monitor travel and physical distancing interventions: a common framework for mobile phone data analysis. The Lancet. Digital health
Cai FY, DeSimone TM, Hansen E, Jennings CV, Bei AK, Ahouidi AD, Mboup S, Duraisingh MT, Buckee CO. (2020). Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains. PLoS computational biology, 16(4)
Shaw WR, Holmdahl IE, Itoe MA, Werling K, Marquette M, Paton DG, Singh N, Buckee CO, Childs LM, Catteruccia F. (2020). Multiple blood feeding in mosquitoes shortens the Plasmodium falciparum incubation period and increases malaria transmission potential. PLoS pathogens, 16(12)
Buckee C. (2020). Improving epidemic surveillance and response: big data is dead, long live big data. The Lancet. Digital health, 2(5)
Watson JA, Taylor AR, Ashley EA, Dondorp A, Buckee CO, White NJ, Holmes CC. (2020). A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices. PLoS genetics, 16(10)
Grantz KH, Meredith HR, Cummings DAT, Metcalf CJE, Grenfell BT, Giles JR, Mehta S, Solomon S, Labrique A, Kishore N, Buckee CO, Wesolowski A. (2020). The use of mobile phone data to inform analysis of COVID-19 pandemic epidemiology. Nature communications, 11(1)
Menkir TF, Chin T, Hay J, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina M, Lipsitch M, Niehus R. (2020). Estimating the number of undetected COVID-19 cases exported internationally from all of China. medRxiv : the preprint server for health sciences
De Salazar PM, Niehus R, Taylor A, Buckee CO, Lipsitch M. (2020). Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions. Emerging infectious diseases, 26(7)
Cevik M, Marcus JL, Buckee C, Smith TC. (2020). SARS-CoV-2 transmission dynamics should inform policy. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Buckee CO, Balsari S, Chan J, Crosas M, Dominici F, Gasser U, Grad YH, Grenfell B, Halloran ME, Kraemer MUG, Lipsitch M, Metcalf CJE, Meyers LA, Perkins TA, Santillana M, Scarpino SV, Viboud C, Wesolowski A, Schroeder A. (2020). Aggregated mobility data could help fight COVID-19. Science (New York, N.Y.)
Peak CM, Kahn R, Grad YH, Childs LM, Li R, Lipsitch M, Buckee CO. (2020). Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study. The Lancet. Infectious diseases
Obeng-Adjei N, Larremore DB, Turner L, Ongoiba A, Li S, Doumbo S, Yazew TB, Kayentao K, Miller LH, Traore B, Pierce SK, Buckee CO, Lavstsen T, Crompton PD, Tran TM. (2020). Longitudinal analysis of naturally acquired PfEMP1 CIDR domain variant antibodies identifies associations with malaria protection. JCI insight
Kissler SM, Kishore N, Prabhu M, Goffman D, Beilin Y, Landau R, Gyamfi-Bannerman C, Bateman BT, Snyder J, Razavi AS, Katz D, Gal J, Bianco A, Stone J, Larremore D, Buckee CO, Grad YH. (2020). Reductions in commuting mobility correlate with geographic differences in SARS-CoV-2 prevalence in New York City. Nature communications, 11(1)
Taylor AR, Echeverry DF, Anderson TJC, Neafsey DE, Buckee CO. (2020). Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast. PLoS genetics, 16(11)
Holmdahl I, Buckee C. (2020). Wrong but Useful - What Covid-19 Epidemiologic Models Can and Cannot Tell Us. The New England journal of medicine
Kahn R, Peak CM, Fernández-Gracia J, Hill A, Jambai A, Ganda L, Castro MC, Buckee CO. (2020). Incubation periods impact the spatial predictability of cholera and Ebola outbreaks in Sierra Leone. Proceedings of the National Academy of Sciences of the United States of America
Chin T, Kahn R, Li R, Chen JT, Krieger N, Buckee CO, Balsari S, Kiang MV. (2020). U.S. county-level characteristics to inform equitable COVID-19 response. medRxiv : the preprint server for health sciences
Buckee CO, Johansson MA. (2020). Individual model forecasts can be misleading, but together they are useful. European journal of epidemiology
Kiang MV, Irizarry RA, Buckee CO, Balsari S. (2020). Every Body Counts: Measuring Mortality From the COVID-19 Pandemic. Annals of internal medicine
Chin T, Buckee CO, Mahmud AS. (2020). Quantifying the success of measles vaccination campaigns in the Rohingya refugee camps. Epidemics, (30)
Acosta RJ, Kishore N, Irizarry RA, Buckee CO. (2020). Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico. Proceedings of the National Academy of Sciences of the United States of America
Peak CM, Kahn R, Grad YH, Childs LM, Li R, Lipsitch M, Buckee CO. (2020). Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19: a modelling study. medRxiv : the preprint server for health sciences
Sinha I, Sayeed AA, Uddin D, Wesolowski A, Zaman SI, Faiz MA, Ghose A, Rahman MR, Islam A, Karim MJ, Saha A, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Chang HH, Miotto O, Kwiatkowski D, Dondorp AM, Day NPJ, Hossain MA, Buckee C, Maude RJ. (2020). Mapping the travel patterns of people with malaria in Bangladesh. BMC medicine, 18(1)
Chin T, Kahn R, Li R, Chen JT, Krieger N, Buckee CO, Balsari S, Kiang MV. (2020). US-county level variation in intersecting individual, household and community characteristics relevant to COVID-19 and planning an equitable response: a cross-sectional analysis. BMJ open, 10(9)
De Salazar Pablo M, Niehus Rene, Taylor Aimee, Buckee Caroline O, Lipsitch Marc. (2019). Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases
Martinez PP, Mahmud AS, Yunus M, Faruque ASG, Ahmed T, Pascual M, Buckee CO. (2020). Tube Well Use as Protection Against Rotavirus Infection During the Monsoons in an Urban Setting. The Journal of infectious diseases, 221(2)
Paton DG, Childs LM, Itoe MA, Holmdahl IE, Buckee CO, Catteruccia F. (2019). Exposing Anopheles mosquitoes to antimalarials blocks Plasmodium parasite transmission. Nature, 567(7747)
Taylor AR, Jacob PE, Neafsey DE, Buckee CO. (2019). Estimating Relatedness Between Malaria Parasites. Genetics, 212(4)
Feachem RGA, Chen I, Akbari O, Bertozzi-Villa A, Bhatt S, Binka F, Boni MF, Buckee C, Dieleman J, Dondorp A, Eapen A, Sekhri Feachem N, Filler S, Gething P, Gosling R, Haakenstad A, Harvard K, Hatefi A, Jamison D, Jones KE, Karema C, Kamwi RN, Lal A, Larson E, Lees M, Lobo NF, Micah AE, Moonen B, Newby G, Ning X, Pate M, Quiñones M, Roh M, Rolfe B, Shanks D, Singh B, Staley K, Tulloch J, Wegbreit J, Woo HJ, Mpanju-Shumbusho W. (2019). Malaria eradication within a generation: ambitious, achievable, and necessary. Lancet, 394(10203)
Taylor AR, Watson JA, Chu CS, Puaprasert K, Duanguppama J, Day NPJ, Nosten F, Neafsey DE, Buckee CO, Imwong M, White NJ. (2019). Resolving the cause of recurrent Plasmodium vivax malaria probabilistically. Nature communications, 10(1)
Kahn R, Mahmud AS, Schroeder A, Aguilar Ramirez LH, Crowley J, Chan J, Buckee CO. (2019). Rapid Forecasting of Cholera Risk in Mozambique: Translational Challenges and Opportunities. Prehospital and disaster medicine, 34(5)
Chang HH, Wesolowski A, Sinha I, Jacob CG, Mahmud A, Uddin D, Zaman SI, Hossain MA, Faiz MA, Ghose A, Sayeed AA, Rahman MR, Islam A, Karim MJ, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Drury E, Gonçalves S, Kekre M, Dhorda M, Vongpromek R, Miotto O, Engø-Monsen K, Kwiatkowski D, Maude RJ, Buckee C. (2019). Mapping imported malaria in Bangladesh using parasite genetic and human mobility data. Elife, (8)
Peak CM, Reilly AL, Azman AS, Buckee CO. (2018). Prolonging herd immunity to cholera via vaccination: Accounting for human mobility and waning vaccine effects. PLoS neglected tropical diseases, 12(2)
Recker M, Bull PC, Buckee CO. (2018). Recent advances in the molecular epidemiology of clinical malaria. F1000Research, (7)
Kishore N, Marqués D, Mahmud A, Kiang MV, Rodriguez I, Fuller A, Ebner P, Sorensen C, Racy F, Lemery J, Maas L, Leaning J, Irizarry RA, Balsari S, Buckee CO. (2018). Mortality in Puerto Rico after Hurricane Maria. The New England journal of medicine, 379(2)
Archer NM, Petersen N, Clark MA, Buckee CO, Childs LM, Duraisingh MT. (2018). Resistance to Plasmodium falciparum in sickle cell trait erythrocytes is driven by oxygen-dependent growth inhibition. Proceedings of the National Academy of Sciences of the United States of America, 115(28)
Peak CM, Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Wetter E, Lu X, Power D, Weidman-Grunewald E, Ramos S, Moritz S, Buckee CO, Bengtsson L. (2018). Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone: use of mobile phone data. International journal of epidemiology, 47(5)
Georgieva M, Buckee CO, Lipsitch M. (2018). Models of immune selection for multi-locus antigenic diversity of pathogens. Nature reviews. Immunology, 19(1)
Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. (2018). Correction to: Mapping malaria by combining parasite genomic and epidemiologic data. BMC medicine, 16(1)
Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF. (2018). Nonannual seasonality of influenza-like illness in a tropical urban setting. Influenza and other respiratory viruses, 12(6)
Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A. (2018). Estimating sources and sinks of malaria parasites in Madagascar. Nature communications, 9(1)
Buckee CO, Cardenas MIE, Corpuz J, Ghosh A, Haque F, Karim J, Mahmud AS, Maude RJ, Mensah K, Motaze NV, Nabaggala M, Metcalf CJE, Mioramalala SA, Mubiru F, Peak CM, Pramanik S, Rakotondramanga JM, Remera E, Sinha I, Sovannaroth S, Tatem AJ, Zaw W. (2018). Productive disruption: opportunities and challenges for innovation in infectious disease surveillance. BMJ global health, 3(1)
Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. (2018). Mapping malaria by combining parasite genomic and epidemiologic data. BMC medicine, 16(1)
Wesolowski A, Winter A, Tatem AJ, Qureshi T, Engø-Monsen K, Buckee CO, Cummings DAT, Metcalf CJE. (2018). Measles outbreak risk in Pakistan: exploring the potential of combining vaccination coverage and incidence data with novel data-streams to strengthen control. Epidemiology and infection, 146(12)
Taylor AR, Schaffner SF, Cerqueira GC, Nkhoma SC, Anderson TJC, Sriprawat K, Pyae Phyo A, Nosten F, Neafsey DE, Buckee CO. (2017). Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent. PLoS genetics, 13(10)
Peak CM, Childs LM, Grad YH, Buckee CO. (2017). Comparing nonpharmaceutical interventions for containing emerging epidemics. Proceedings of the National Academy of Sciences of the United States of America, 114(15)
Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE. (2017). Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead. Proceedings. Biological sciences, 284(1860)
Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Lourenço C, Viboud C, Charu V, Eagle N, Engø-Monsen K, Qureshi T, Buckee CO, Metcalf CJE. (2017). Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics. Nature communications, 8(1)
Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B. (2016). THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS computational biology, 13(1)
Wesolowski A, Mensah K, Brook CE, Andrianjafimasy M, Winter A, Buckee CO, Razafindratsimandresy R, Tatem AJ, Heraud JM, Metcalf CJ. (2016). Introduction of rubella-containing-vaccine to Madagascar: implications for roll-out and local elimination. Journal of the Royal Society, Interface, 13(117)
Shaw WR, Marcenac P, Childs LM, Buckee CO, Baldini F, Sawadogo SP, Dabiré RK, Diabaté A, Catteruccia F. (2016). Wolbachia infections in natural Anopheles populations affect egg laying and negatively correlate with Plasmodium development. Nature communications, (7)
Childs LM, Cai FY, Kakani EG, Mitchell SN, Paton D, Gabrieli P, Buckee CO, Catteruccia F. (2016). Disrupting Mosquito Reproduction and Parasite Development for Malaria Control. PLoS pathogens, 12(12)
Wesolowski A, Buckee CO, Engø-Monsen K, Metcalf CJE. (2016). Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data. The Journal of infectious diseases, 214(suppl_4)
Buckee CO, Tatem AJ, Metcalf CJE. (2016). Seasonal Population Movements and the Surveillance and Control of Infectious Diseases. Trends in parasitology, 33(1)
Chang HH, Meibalan E, Zelin J, Daniels R, Eziefula AC, Meyer EC, Tadesse F, Grignard L, Joice RC, Drakeley C, Wirth DF, Volkman SK, Buckee C, Bousema T, Marti M. (2016). Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda. Scientific reports, (6)
Chang HH, Childs LM, Buckee CO. (2016). Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite. Scientific reports, (6)
Obaldía N 3rd., Dow GS, Gerena L, Kyle D, Otero W, Mantel PY, Baro N, Daniels R, Mukherjee A, Childs LM, Buckee C, Duraisingh MT, Volkman SK, Wirth DF, Marti M. (2016). Altered drug susceptibility during host adaptation of a Plasmodium falciparum strain in a non-human primate model. Scientific reports, (6)
Nilsson SK, Childs LM, Buckee C, Marti M. (2015). Targeting Human Transmission Biology for Malaria Elimination. PLoS pathogens, 11(6)
Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MC, Gupta S. (2015). Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae. PLoS pathogens, 11(7)
Wesolowski A, O'Meara WP, Eagle N, Tatem AJ, Buckee CO. (2015). Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa. PLoS computational biology, 11(7)
Childs LM, Abuelezam NN, Dye C, Gupta S, Murray MB, Williams BG, Buckee CO. (2015). Modelling challenges in context: lessons from malaria, HIV, and tuberculosis. Epidemics, (10)
Wesolowski A, Metcalf CJ, Eagle N, Kombich J, Grenfell BT, Bjørnstad ON, Lessler J, Tatem AJ, Buckee CO. (2015). Quantifying seasonal population fluxes driving rubella transmission dynamics using mobile phone data. Proceedings of the National Academy of Sciences of the United States of America, 112(35)
Childs LM, Buckee CO. (2015). Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics. Journal of the Royal Society, Interface, 12(104)
Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. (2015). Ape parasite origins of human malaria virulence genes. Nature communications, (6)
Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF. (2015). Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010. The American journal of tropical medicine and hygiene, 92(4)
Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO. (2015). Impact of human mobility on the emergence of dengue epidemics in Pakistan. Proceedings of the National Academy of Sciences of the United States of America, 112(38)
Wesolowski A, O'Meara WP, Tatem AJ, Ndege S, Eagle N, Buckee CO. (2015). Quantifying the impact of accessibility on preventive healthcare in sub-Saharan Africa using mobile phone data. Epidemiology (Cambridge, Mass.), 26(2)
Wesolowski A, Buckee CO, Bengtsson L, Wetter E, Lu X, Tatem AJ. (2014). Commentary: containing the ebola outbreak - the potential and challenge of mobile network data. PLoS currents, (6)
Wesolowski A, Stresman G, Eagle N, Stevenson J, Owaga C, Marube E, Bousema T, Drakeley C, Cox J, Buckee CO. (2014). Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones. Scientific reports, (4)
Coleman BI, Skillman KM, Jiang RHY, Childs LM, Altenhofen LM, Ganter M, Leung Y, Goldowitz I, Kafsack BFC, Marti M, Llinás M, Buckee CO, Duraisingh MT. (2014). A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion. Cell host & microbe, 16(2)
Watkins ER, Grad YH, Gupta S, Buckee CO. (2014). Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires. Scientific reports, (4)
Smith DL, Perkins TA, Reiner RC Jr., Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Stoller J, Tatem AJ, Kitron U, Godfray HC, Cohen JM, Hay SI, Scott TW. (2014). Recasting the theory of mosquito-borne pathogen transmission dynamics and control. Transactions of the Royal Society of Tropical Medicine and Hygiene, 108(4)
Bei AK, Diouf A, Miura K, Larremore DB, Ribacke U, Tullo G, Moss EL, Neafsey DE, Daniels RF, Zeituni AE, Nosamiefan I, Volkman SK, Ahouidi AD, Ndiaye D, Dieye T, Mboup S, Buckee CO, Long CA, Wirth DF. (2014). Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission. Infection and immunity, 83(1)
Buckee CO. (2014). Society: Protect privacy of mobile data. Nature, 514(7520)
Lim C, Hansen E, DeSimone TM, Moreno Y, Junker K, Bei A, Brugnara C, Buckee CO, Duraisingh MT. Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans. Nature communications, (4)
Hansen E, Buckee CO. (2013). Modeling the human infectious reservoir for malaria control: does heterogeneity matter?. Trends in parasitology, 29(6)
Reiner RC Jr., Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Tatem AJ, Kitron U, Hay SI, Scott TW, Smith DL. (2013). A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010. Journal of the Royal Society, Interface, 10(81)
Larremore DB, Clauset A, Buckee CO. (2013). A network approach to analyzing highly recombinant malaria parasite genes. PLoS computational biology, 9(10)
Wesolowski A, Buckee CO, Pindolia DK, Eagle N, Smith DL, Garcia AJ, Tatem AJ. (2013). The use of census migration data to approximate human movement patterns across temporal scales. PLoS One, 8(1)
Buckee CO, Wesolowski A, Eagle NN, Hansen E, Snow RW. (2013). Mobile phones and malaria: modeling human and parasite travel. Travel medicine and infectious disease, 11(1)
Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. (2013). The impact of biases in mobile phone ownership on estimates of human mobility. Journal of the Royal Society, Interface, 10(81)
Salathé M, Bengtsson L, Bodnar TJ, Brewer DD, Brownstein JS, Buckee C, Campbell EM, Cattuto C, Khandelwal S, Mabry PL, Vespignani A. (2012). Digital epidemiology. PLoS computational biology, 8(7)
Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. (2012). Heterogeneous mobile phone ownership and usage patterns in Kenya. PLoS One, 7(4)
Penman BS, Gupta S, Buckee CO. (2012). The emergence and maintenance of sickle cell hotspots in the Mediterranean. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 12(7)
Wesolowski A, Eagle N, Tatem AJ, Smith DL, Noor AM, Snow RW, Buckee CO. (2012). Quantifying the impact of human mobility on malaria. Science (New York, N.Y.), 338(6104)
Buckee CO, Recker M. (2012). Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum. PLoS computational biology, 8(4)
Buckee CO, Recker M, Watkins ER, Gupta S. (2011). Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations. Proceedings of the National Academy of Sciences of the United States of America, 108(37)
Buckee CO, Gupta S, Kriz P, Maiden MC, Jolley KA. (2010). Long-term evolution of antigen repertoires among carried meningococci. Proceedings. Biological sciences, 277(1688)
Buckee CO, Gupta S. (2009). Modelling malaria population structure and its implications for control. Advances in experimental medicine and biology, (673)
Buckee CO, Jolley KA, Recker M, Penman B, Kriz P, Gupta S, Maiden MC. (2008). Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proceedings of the National Academy of Sciences of the United States of America, 105(39)
Recker M, Arinaminpathy N, Buckee CO. (2008). The effects of a partitioned var gene repertoire of Plasmodium falciparum on antigenic diversity and the acquisition of clinical immunity. Malaria journal, (7)
Buckee CO, Bull PC, Gupta S. (2009). Inferring malaria parasite population structure from serological networks. Proceedings. Biological sciences, 276(1656)
Buckee C, Danon L, Gupta S. (2007). Host community structure and the maintenance of pathogen diversity. Proceedings. Biological sciences, 274(1619)
Buckee CO, Koelle K, Mustard MJ, Gupta S. (2004). The effects of host contact network structure on pathogen diversity and strain structure. Proceedings of the National Academy of Sciences of the United States of America, 101(29)
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