Sbe Office of Multidisciplinary Activities (SMA)
People: Daniel Larremore
2017 – 2020
Larremore DB, Wilder B, Lester E, Shehata S, Burke JM, Hay JA, Tambe M, Mina MJ, Parker R. (2020). Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance. medRxiv : the preprint server for health sciences
Daniel B Larremore, Bryan Wilder, Evan Lester, Soraya Shehata, James M Burke, James A Hay, Milind Tambe, Michael J Mina, Roy Parker. (2020). Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance. MedRxiv
Daniel B Larremore, Bailey K Fosdick, Sam Zhang, Yonatan H Grad. (2020). Jointly modeling prevalence, sensitivity and specificity for optimal sample allocation. bioRxiv
Daniel B Larremore, Bailey K Fosdick, Kate M Bubar, Sam Zhang, Stephen M Kissler, C Jessica E Metcalf, Caroline Buckee, Yonatan Grad. (2020). Estimating SARS-CoV-2 seroprevalence and epidemiological parameters with uncertainty from serological surveys. MedRxiv
Tzu-Chi Yen, Daniel B Larremore. (2020). Community Detection in Bipartite Networks with Stochastic Blockmodels. arXiv
Obeng-Adjei N, Larremore DB, Turner L, Ongoiba A, Li S, Doumbo S, Yazew TB, Kayentao K, Miller LH, Traore B, Pierce SK, Buckee CO, Lavstsen T, Crompton PD, Tran TM. (2020). Longitudinal analysis of naturally acquired PfEMP1 CIDR domain variant antibodies identifies associations with malaria protection. JCI insight
Mari Kawakatsu, Philip S Chodrow, Nicole Eikmeier, Daniel B Larremore. (2020). Emergence of Hierarchy in Networked Endorsement Dynamics. arXiv
Ryan M Layer, Bailey Fosdick, Daniel B Larremore, Michael Bradshaw, Paul Doherty. (2020). Case Study: Using Facebook Data to Monitor Adherence to Stay-at-home Orders in Colorado and Utah. MedRxiv
Amy K Bei, Daniel B Larremore, Kazutoyo Miura, Ababacar Diouf, Nicholas K Baro, Rachel F Daniels, Allison Griggs, Eli L Moss, Daniel E Neafsey, Awa B Deme, Mouhamad Sy, Stephen Schaffner, Ambroise D Ahouidi, Daouda Ndiaye, Tandakha Dieye, Souleymane Mboup, Caroline O Buckee, Sarah K Volkman, Carole A Long, Dyann B Wirth. (2020). Plasmodium falciparum population genetic complexity influences transcriptional profile and immune recognition of highly related genotypic clusters. bioRxiv
Berdahl A, Brelsford C, Bacco C, Dumas M, Ferdinand V, Grochow JA, Hébert-Dufresne L, Kallus Y, Kempes CP, Kolchinsky A, Larremore DB, Libby E, Power EA, Stern CA, Tracey BD. (2019). Dynamics of beneficial epidemics. Scientific reports, 9(1)
Kathleen Finlinson, Woodrow L Shew, Daniel B Larremore, Juan G Restrepo. (2019). Control of excitable systems is optimal near criticality. arXiv
K Hunter Wapman, Daniel B Larremore. (2019). webweb: a tool for creating, displaying, and sharing interactive network visualizations on the web. The Journal of Open Source Software, 4(40)
Way SF, Morgan AC, Larremore DB, Clauset A. (2019). Productivity, prominence, and the effects of academic environment. Proceedings of the National Academy of Sciences of the United States of America, 116(22)
Larremore DB. (2019). Bayes-optimal estimation of overlap between populations of fixed size. PLoS computational biology, 15(3)
Agrawal V, Cowley AB, Alfaori Q, Larremore DB, Restrepo JG, Shew WL. (2018). Robust entropy requires strong and balanced excitatory and inhibitory synapses. Chaos (Woodbury, N.Y.), 28(10)
De Bacco C, Larremore DB, Moore C. (2018). A physical model for efficient ranking in networks. Science advances, 4(7)
Way SF, Morgan AC, Clauset A, Larremore DB. (2017). The misleading narrative of the canonical faculty productivity trajectory. Proceedings of the National Academy of Sciences of the United States of America, 114(44)
Andrew Berdahl, Uttam Bhat, Vanessa Ferdinand, Joshua Garland, Keyan Ghazi-Zahedi, Justin Grana, Joshua A Grochow, Elizabeth Hobson, Yoav Kallus, Christopher P Kempes, Artemy Kolchinsky, Daniel B Larremore, Eric Libby, Eleanor A Power, Brendan D Tracey. (2017). On the records. arXiv
Clauset A, Larremore DB, Sinatra R. (2017). Data-driven predictions in the science of science. Science (New York, N.Y.), 355(6324)
Peel L, Larremore DB, Clauset A. (2017). The ground truth about metadata and community detection in networks. Science advances, 3(5)
De Bacco C, Power EA, Larremore DB, Moore C. (2017). Community detection, link prediction, and layer interdependence in multilayer networks. Physical review. E, 95(4-1)
Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. (2015). Ape parasite origins of human malaria virulence genes. Nature communications, (6)
Clauset A, Arbesman S, Larremore DB. (2015). Systematic inequality and hierarchy in faculty hiring networks. Science advances, 1(1)
Bei AK, Diouf A, Miura K, Larremore DB, Ribacke U, Tullo G, Moss EL, Neafsey DE, Daniels RF, Zeituni AE, Nosamiefan I, Volkman SK, Ahouidi AD, Ndiaye D, Dieye T, Mboup S, Buckee CO, Long CA, Wirth DF. (2015). Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission. Infection and immunity, 83(1)
Larremore DB, Shew WL, Ott E, Sorrentino F, Restrepo JG. (2014). Inhibition causes ceaseless dynamics in networks of excitable nodes. Physical review letters, 112(13)
Larremore DB, Clauset A, Jacobs AZ. (2014). Efficiently inferring community structure in bipartite networks. Physical review. E, Statistical, nonlinear, and soft matter physics, 90(1)
Larremore DB, Clauset A, Buckee CO. (2013). A network approach to analyzing highly recombinant malaria parasite genes. PLoS computational biology, 9(10)
Larremore DB, Carpenter MY, Ott E, Restrepo JG. (2012). Statistical properties of avalanches in networks. Physical review. E, Statistical, nonlinear, and soft matter physics, 85(6 Pt 2)
Taylor D, Larremore DB. (2012). Social climber attachment in forming networks produces a phase transition in a measure of connectivity. Physical review. E, Statistical, nonlinear, and soft matter physics, 86(3 Pt 1)
Larremore DB, Shew WL, Restrepo JG. (2011). Predicting criticality and dynamic range in complex networks: effects of topology. Physical review letters, 106(5)
MIDAS Coordination Center
University of Pittsburgh
A737 Public Health
130 DeSoto Street
Pittsburgh PA 15261
