National Institutes of Health, National Institute of Allergy and Infectious Diseases
People: Daniel Weinberger
2026 – 2031 Continue Reading Serotype re-emergence and vaccine impact in the era of next-generation pneumococcal vaccines
National Institutes of Health, National Institute of Allergy and Infectious Diseases
People: Daniel Weinberger, Joshua Warren, Virginia Pitzer
2018 – 2024 Continue Reading Predicting and monitoring variations in the effects of vaccines against RSV
National Institutes of Health, National Institute of Allergy and Infectious Diseases
People: Daniel Weinberger, Joshua Warren
2016 – 2021 Continue Reading Forecasting pneumococcal serotype frequencies to develop adult-specific vaccines
National Institutes of Health, National Institute of Allergy and Infectious Diseases
People: Daniel Weinberger
2015 – 2017 Continue Reading Forecasting pneumococcal serotype frequencies to develop adult-specific vaccines
Xu H, Pitzer VE, Warren JL, Shapiro ED, Perniciaro S, Weinberger DM. (2026). Estimating the burden of RSV- and influenza-associated ED visits, hospitalizations, ICU admissions, and deaths across age and socioeconomic groups in New York State, 2005-2019. BMC infectious diseases
Bellamkonda KS, Newton L, Korves C, Weinberger D, Zwain G, Eid M, Fowler X, Ponukumati A, Robertson D, Wilson MZ, Justice AC, Vashi A, Goodney PP, Davies L. (2026). Colorectal cancer T stage, size at diagnosis, and presentation 2017 to 2023: an analysis using Veterans Affairs data. Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract, 30(4)
Aparicio Llorente C, Wats A, Araujo BL, Moniz Ganem J, Oliva IO, Xu H, Brodsky NN, Lucas CL, Aronson PL, Grubaugh ND, Breban M, Redmond S, Shapiro ED, Niccolai LM, Weinberger DM, Oliveira CR. (2026). Real-world effectiveness of perinatal RSV immunoprophylaxis: protocol for a test-negative case-control study. BMJ open, 16(3)
Kalinich CC, Gonzalez FL, Osmaston A, Breban MI, Distefano I, Leon C, Coronel J, Tan G, Crudu V, Ciobanu N, Codreanu A, Solano W, Ráez J, Sheen P, Zimic M, Allicock OM, Chaguza C, Wyllie AL, Brandt M, Weinberger DM, Sobkowiak B, Cohen T, Grandjean L, Grubaugh ND, Redmond SN. (2026). A tiled amplicon protocol for culture-free whole-genome sequencing of M. tuberculosis from clinical specimens. Journal of clinical microbiology
Li K, Hou Y, Mukherjee B, Pitzer VE, Weinberger DM. (2026). HHBayes: A Flexible Bayesian Framework for Simulating and Analyzing Household Transmission Dynamics. medRxiv : the preprint server for health sciences
Thindwa D, Carcamo PM, Dagan R, Weinberger DM. (2026). What is driving the resurgence and persistence of vaccine-targeted pneumococcal serotypes?-Serotype 19F as the paradigm. PLoS pathogens, 22(3)
Kwon J, Li K, Warren JL, Pandya S, Hahn AM, , Pitzer VE, Weinberger DM, Grubaugh ND. (2026). Utilizing virus genomic surveillance to predict vaccine effectiveness. PLoS computational biology, 22(5)
Rave N, de Bruijne MEM, Stellato RK, Bannier MAGE, Weinberger DM, Löwensteyn YN, Wildenbeest JG, Bont LJ, . (2026). Normalization of Seasonality and Age Distribution of Pediatric RSV Infection Following the Pandemic Disruption in the Netherlands. Open forum infectious diseases, 13(1)
Rountree L, Zimmermann L, Teed L, Weinberger DM, Mukherjee B. (2026). A Tutorial on Implementing Statistical Methods for Estimating Excess Death With a Case Study and Simulations on Estimating Excess Death in the Post-COVID-19 United States. Statistics in medicine, 45(3-5)
Li K, Hamrin J, Nilsson A, Weinberger DM, Pitzer VE. (2025). Unraveling the role of viral interference in disrupting biennial RSV epidemics in northern Stockholm. Nature communications, 16(1)
Li K, Pitzer VE, Weinberger DM. (2025). Exploring RSV transmission patterns in different age groups in the United States. The Journal of infectious diseases
Shang L, Perniciaro S, Weinberger DM. (2025). Changes in pneumococcal deaths in the United States following the COVID-19 pandemic. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases
Draidi Areed W, Nguyen TTT, Quoc Do K, Nguyen T, Bui V, Nelson E, Warren JL, Doan QV, Sinh NV, Osborne NJ, Richards R, Tran NQL, Le H, Pham T, Hung TM, Nghiem S, Phung H, Chu C, Dubrow R, Weinberger DM, Phung D. (2025). A district-level ensemble model to enhance dengue prediction and control for the mekong delta region of Vietnam. PLoS neglected tropical diseases, 19(9)
Wong A, Warren JL, Fitch L, Perniciaro S, Dagan R, Weinberger DM. (2025). Estimating the serotype-specific association between the concentration of vaccine-induced serum antibodies and protection against pneumococcal colonization. The Journal of infectious diseases
Peno C, Thindwa D, Hislop MS, Yolda-Carr D, Egbewole D, Viswanathan G, Lin TY, Mbodj S, Rayack E, Askari HM, Kazemi Y, Lapidus S, Spatz ES, Zirinsky E, Oliveira CR, Bei AK, Weinberger DM, Wyllie AL. (2025). Temporal changes in pneumococcal carriage among childcare-attending children during the COVID-19 pandemic in the Greater New Haven Area, USA. Research square
Porzucek AJ, Lopes R, Chew YT, Li K, Brady OJ, Warren JL, Carlson CJ, Weinberger DM, Grubaugh ND. (2025). Variations in annual dengue intensities are explained by temperature anomalies. medRxiv : the preprint server for health sciences
Chaguza C, Arends DW, Lo SW, Putri IH, York A, Lees JA, Wyllie AL, Weinberger DM, Bentley SD, de Jonge MI, Cremers AJH. (2025). The capsule and genetic background, rather than specific individual loci, strongly influence in vitro pneumococcal growth kinetics. eLife, (14)
Chen NFG, Pham K, Chaguza C, Lopes R, Klaassen F, Kalinich CC, Yale Sars-CoV-Genomic Surveillance Initiative, Kerantzas N, Pandya S, Ferguson D, Schulz W, Weinberger DM, Pitzer VE, Warren JL, Grubaugh ND, Hahn AM. (2025). Integrated Analysis of the 2022 SARS-CoV-2 Omicron Lineage Replacement Dynamics in Connecticut, US. Viruses, 17(7)
Li K, Bont LJ, Weinberger DM, Pitzer VE. (2025). Relating in vivo RSV infection kinetics to host infectiousness in different age groups. The Journal of infectious diseases
Phung D, Colón-González FJ, Weinberger DM, Bui V, Nghiem S, Chu C, Phung H, Sinh Vu N, Doan QV, Hashizume M, Lau CL, Reid S, Phan LT, Tran DN, Pham CT, Do KQ, Dubrow R. (2025). Advancing adoptability and sustainability of digital prediction tools for climate-sensitive infectious disease prevention and control. Nature communications, 16(1)
Xu H, Pitzer VE, Warren JL, Shapiro ED, Weinberger DM. (2025). Estimating the burden of RSV- and influenza-associated hospitalizations, ICU admissions, and deaths across age and socioeconomic groups in New York State, 2005-2019. medRxiv : the preprint server for health sciences
Lucas BP, Weinberger DM, Vashi AA, Smith J, Korves C, Justice AC, Neugaard BI, Davies L. (2025). Do discharge delays explain longer stays at veterans health administration hospitals?. BMC health services research, 25(1)
Dagan R, van der Beek BA, Grupel T, Greenberg D, Keren-Naus A, Ben-Shimol S, Weinberger DM. (2025). Decline of community-acquired alveolar pneumonia positive for respiratory syncytial virus in hospitalized children following implementation of PCV in Israel. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Wong A, Kramer SC, Weinberger DM, Domenech de Cellès M. (2025). Assessing the effect of social contact structure on the impact of pneumococcal conjugate vaccines. Scientific reports, 15(1)
Hensen LCM, Streng BMM, van Wijk F, Nierkens S, van Binnendijk RS, Buisman AM, Coppus AMW, Geurts van Kessel CH, de Graaf G, van der Klis FR, Lamberts R, Vidarsson G, Ruckwardt TJ, de Vries E, de Vries RD, Weijerman ME, Weinberger DM, Wildenbeest JG, Bont LJ, Delemarre EM. (2025). T-cell responses to SARS-CoV-2 vaccinations in adults with Down syndrome - a prospective cohort study. Human vaccines & immunotherapeutics, 21(1)
Xu H, Aparicio C, Wats A, Araujo BL, Pitzer VE, Warren JL, Shapiro ED, Niccolai LM, Weinberger DM, Oliveira CR. (2025). Estimated Effectiveness of Nirsevimab Against Respiratory Syncytial Virus. JAMA network open, 8(3)
Newton LE, Korves C, Zwain G, Fowler XP, Bellamkonda K, Rosa S, Denny J, Huynh J, Weinberger DM, Justice A, Vashi A, Goodney PP, Wilson MZ, Davies L. (2025). Trends in Colon Cancer Colectomy Volume and Inpatient Costs, 2018-2023: A Medicare Analysis. The Journal of surgical research, (316)
Chitwood MH, Corbett EL, Ndhlovu V, Sobkowiak B, Colijn C, Andrews JR, Burke RM, Cudahy PGT, Dodd PJ, Imai-Eaton JW, Engelthaler DM, Folkerts M, Feasey HRA, Lan Y, Lewis J, McNichol J, Menzies NA, Chipungu G, Nliwasa M, Weinberger DM, Warren JL, Salomon JA, MacPherson P, Cohen T. (2025). Distribution and transmission of M. tuberculosis in a high-HIV prevalence city in Malawi: A genomic and spatial analysis. PLOS global public health, 5(4)
Li K, Thindwa D, Weinberger DM, Pitzer VE. (2025). The Role of Viral Interference in Shaping RSV Epidemics Following the 2009 H1N1 Influenza Pandemic. Influenza and other respiratory viruses, 19(4)
Thindwa D, Shapiro ED, Weinberger DM. (2025). The Complex Landscape of Updated Pneumococcal Conjugate Vaccines. Open forum infectious diseases, 12(2)
Prunas O, Asare EO, Sajewski E, Li Y, Pithawala Z, Weinberger DM, Warren JL, Armah GE, Cunliffe NA, Iturriza-Gómara M, Lopman BA, Pitzer VE. (2025). Global estimates of rotavirus vaccine efficacy and effectiveness: a rapid review and meta-regression analysis. EClinicalMedicine, (81)
Waghela P, Davis R, Campbell M, Datta R, Hislop MS, Vega NJ, Wurst L, Yolda-Carr D, Couch L, Hernandez M, Grant LR, Alexander-Parrish R, Arguedas A, Gessner BD, Martinello RA, Weinberger DM, Wyllie AL. (2025). Detection of Pneumococcal Carriage in Asymptomatic Healthcare Workers. Open forum infectious diseases, 12(2)
Thindwa D, Li K, Cooper-Wootton D, Zheng Z, Pitzer VE, Weinberger DM. (2024). Global patterns of rebound to normal RSV dynamics following COVID-19 suppression. BMC infectious diseases, 24(1)
Kalinich CC, Gonzalez FL, Osmaston A, Breban MI, Distefano I, Leon C, Sheen P, Zimic M, Coronel J, Tan G, Crudu V, Ciobanu N, Codreanu A, Solano W, Ráez J, Allicock OM, Chaguza C, Wyllie AL, Brandt M, Weinberger DM, Sobkowiak B, Cohen T, Grandjean L, Grubaugh ND, Redmond SN. (2024). Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens. bioRxiv : the preprint server for biology
Prunas O, Shioda K, Toscano CM, Bastias M, Valenzuela-Bravo MT, Diaz Tito J, Warren JL, Weinberger DM, de Oliveira LH. (2024). Estimated population-level impact of pneumococcal conjugate vaccines against all-cause pneumonia mortality among unvaccinated age groups in five Latin American countries. The Journal of infectious diseases
Peno C, Lin T-Y, Hislop MS, Yolda-Carr D, Farjado K, York A, Pitzer VE, Weinberger DM, Bei AK, Allicock OM, Wyllie AL. (2024). A low-cost culture- and DNA extraction-free method for the molecular detection of pneumococcal carriage in saliva. Microbiology spectrum
Cassell K, Warren JL, Heneghen C, Weinberger DM. (2024). Incorporating incubation period distributions to precisely estimate the association between rainfall and Legionella infection. The Journal of infectious diseases
Korves C, Peixoto AJ, Lucas BP, Davies L, Weinberger DM, Rentsch C, Vashi A, Young-Xu Y, King J Jr., Asch SM, Justice AC. (2024). Hypertension Control During the Coronavirus Disease 2019 Pandemic: A Cohort Study Among U.S. Veterans. Medical care
Li K, Chaguza C, Stamp J, Chew YT, Chen NFG, Ferguson D, Pandya S, Kerantzas N, Schulz W, , Hahn AM, Ogbunugafor CB, Pitzer VE, Crawford L, Weinberger DM, Grubaugh ND. (2024). Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections. PLoS computational biology, 20(9)
Wyllie AL, Yolda-Carr D, Hislop MS, Mbodj S, Wurst L, Waghela P, Alexander-Parrish R, Grant LR, Arguedas A, Gessner BD, Weinberger DM. (2024). Contact with young children is a major risk factor for pneumococcal colonization in older adults. FEMS microbes, (5)
Xu H, Aparicio C, Wats A, Araujo BL, Pitzer VE, Warren JL, Shapiro ED, Niccolai LM, Weinberger DM, Oliveira CR. (2024). Real-World Effectiveness of Nirsevimab Against Respiratory Syncytial Virus: A Test-Negative Case-Control Study. medRxiv : the preprint server for health sciences
Bell R, Weinberger DM, Venkatesh M, Fernandes-Taylor S, Francis DO, Davies L. (2024). Thyroid Cancer Incidence During 2020 to 2021 COVID-19 Variant Waves. JAMA otolaryngology-- head & neck surgery
Besteman SB, Bogaert D, Bont L, Mejias A, Ramilo O, Weinberger DM, Dagan R. (2024). Interactions between respiratory syncytial virus and Streptococcus pneumoniae in the pathogenesis of childhood respiratory infections: a systematic review. The Lancet. Respiratory medicine
Savinkina A, Weinberger DM, Toscano CM, De Oliveira LH. (2024). Estimated Deaths Averted in Adults by COVID-19 Vaccination in Select Latin American and Caribbean Countries. Open forum infectious diseases, 11(10)
Rezahosseini O, Eiberg MF, Weinberger DM, Harboe ZB. (2024). Does 23-Valent Pneumococcal Polysaccharide Vaccination Decrease All-Cause Mortality?. Open forum infectious diseases, 11(11)
Weinberger DM, Rose L, Rentsch C, Asch SM, Columbo JA, King J Jr., Korves C, Lucas BP, Taub C, Young-Xu Y, Vashi A, Davies L, Justice AC. (2023). Excess Mortality Among Patients in the Veterans Affairs Health System Compared With the Overall US Population During the First Year of the COVID-19 Pandemic. JAMA network open, 6(5)
York A, Huynh E, Mbodj S, Yolda-Carr D, Hislop MS, Echlin H, Rosch JW, Weinberger DM, Wyllie AL. (2023). Magnetic bead-based separation of pneumococcal serotypes. Cell reports methods, 3(2)
Feikin DR, Karron RA, Saha SK, Sparrow E, Srikantiah P, Weinberger DM, Zar HJ. (2023). The full value of immunisation against respiratory syncytial virus for infants younger than 1 year: effects beyond prevention of acute respiratory illness. The Lancet. Infectious diseases
Lee WE, Woo Park S, Weinberger DM, Olson D, Simonsen L, Grenfell BT, Viboud C. (2023). Direct and indirect mortality impacts of the COVID-19 pandemic in the United States, March 1, 2020 to January 1, 2022. eLife, (12)
Löwensteyn YN, Zheng Z, Rave N, Bannier MAGE, Billard MN, Casalegno JS, Pitzer VE, Wildenbeest JG, Weinberger DM, Bont L, . (2023). Year-round RSV Transmission in the Netherlands Following the COVID-19 Pandemic - A Prospective Nationwide Observational and Modeling Study. The Journal of infectious diseases
Hislop MS, Allicock OM, Thammavongsa DA, Mbodj S, Nelson A, Shaw AC, Weinberger DM, Wyllie AL. (2023). High Levels of Detection of Nonpneumococcal Species of Streptococcus in Saliva from Adults in the United States. Microbiology spectrum, 11(3)
Manna S, Weinberger DM, Satzke C. (2023). Editorial: Thematic issue on bacterial-viral co-infections. FEMS microbes, (4)
Weinberger DM, Bhaskaran K, Korves C, Lucas BP, Columbo JA, Vashi A, Davies L, Justice AC, Rentsch CT. (2023). Absolute and relative excess mortality across demographic and clinical subgroups during the COVID-19 pandemic: an individual-level cohort study from a nationwide healthcare system of US Veterans. medRxiv : the preprint server for health sciences
Warren JL, Sundaram M, Pitzer VE, Omer SB, Weinberger DM. (2023). Incorporating efficacy data from initial trials into subsequent evaluations: Application to vaccines against respiratory syncytial virus. Epidemiology (Cambridge, Mass.)
Perniciaro S, Cooper-Wooton D, Knoll M, Weinberger D. (2023). Worldwide Index of Serotype-Specific Pneumococcal Antibody Responses (WISSPAR): A curated database of clinical trial data. Gates open research, (7)
Wyllie AL, Mbodj S, Thammavongsa DA, Hislop MS, Yolda-Carr D, Waghela P, Nakahata M, Stahlfeld AE, Vega NJ, York A, Allicock OM, Wilkins G, Ouyang A, Siqueiros L, Strong Y, Anastasio K, Alexander-Parrish R, Arguedas A, Gessner BD, Weinberger DM. (2023). Persistence of Pneumococcal Carriage among Older Adults in the Community despite COVID-19 Mitigation Measures. Microbiology spectrum, 11(3)
Ellingson MK, Weinberger DM, van der Linden M, Perniciaro S. (2023). Potential Impact of Higher-Valency Pneumococcal Conjugate Vaccines Among Adults in Different Localities in Germany. The Journal of infectious diseases
Weinberger DM, Bhaskaran K, Korves C, Lucas BP, Columbo JA, Vashi A, Davies L, Justice AC, Rentsch CT. (2023). Excess mortality in US Veterans during the COVID-19 pandemic: an individual-level cohort study. International journal of epidemiology
Prunas O, Willemsen JE, Bont L, Pitzer VE, Warren JL, Weinberger DM. (2023). Incorporating data from multiple endpoints in the analysis of clinical trials: example from RSV vaccines. Epidemiology (Cambridge, Mass.)
Dagan R, van der Beek BA, Ben-Shimol S, Greenberg D, Shemer-Avni Y, Weinberger DM, Danino D. (2023). The COVID-19 pandemic as an opportunity for unravelling the causative association between respiratory viruses and pneumococcus-associated disease in young children: a prospective study. EBioMedicine, (90)
Dagan R, Danino D, Weinberger DM. (2022). The Pneumococcus-Respiratory Virus Connection-Unexpected Lessons From the COVID-19 Pandemic. JAMA network open, 5(6)
Chitwood MH, Russi M, Gunasekera K, Havumaki J, Klaassen F, Pitzer VE, Salomon JA, Swartwood NA, Warren JL, Weinberger DM, Cohen T, Menzies NA. (2022). Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model. PLoS computational biology, 18(8)
Prunas O, Warren JL, Crawford FW, Gazit S, Patalon T, Weinberger DM, Pitzer VE. (2022). Vaccination with BNT162b2 reduces transmission of SARS-CoV-2 to household contacts in Israel. Science (New York, N.Y.), 375(6585)
Cassell K, Zipfel CM, Bansal S, Weinberger DM. (2022). Trends in non-COVID-19 hospitalizations prior to and during the COVID-19 pandemic period, United States, 2017 â€" 2021. medRxiv : the preprint server for health sciences
Zheng Z, Weinberger DM, Pitzer VE. (2022). Predicted effectiveness of vaccines and extended half-life monoclonal antibodies against RSV hospitalizations in children. NPJ vaccines, 7(1)
Zheng Z, Warren JL, Shapiro ED, Pitzer VE, Weinberger DM. (2022). Estimated incidence of respiratory hospitalizations attributable to RSV infections across age and socioeconomic groups. Pneumonia (Nathan Qld.), 14(1)
Allicock OM, York A, Waghela P, Yolda-Carr D, Weinberger DM, Wyllie AL. (2022). Impact of Temporary Storage Conditions on the Viability of Streptococcus pneumoniae in Saliva. mSphere, 7(6)
Oliveira CR, Shapiro ED, Weinberger DM. (2022). Bayesian Model Averaging to Account for Model Uncertainty in Estimates of a Vaccine's Effectiveness. Clinical epidemiology, (14)
Lee WE, Park SW, Weinberger DM, Olson D, Simonsen L, Grenfell BT, Viboud C. (2022). Direct and indirect mortality impacts of the COVID-19 pandemic in the US, March 2020-April 2021. medRxiv : the preprint server for health sciences
Stahlfeld A, Glick LR, Ott IM, Craft SB, Yolda-Carr D, Harden CA, Nakahata M, Farhadian SF, Grant LR, Alexander-Parrish R, Arguedas A, Gessner BD, Weinberger DM, Wyllie AL. (2022). Detection of pneumococcus during hospitalization for SARS-CoV-2. FEMS microbes, (3)
Prunas O, Weinberger DM, Pitzer VE, Gazit S, Patalon T. (2023). Waning Effectiveness of the BNT162b2 Vaccine Against Infection in Adolescents in Israel. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 76(1)
Zheng Z, Warren JL, Artin I, Pitzer VE, Weinberger DM. (2022). Relative timing of respiratory syncytial virus epidemics in summer 2021 across the United States was similar to a typical winter season. Influenza and other respiratory viruses
Cassell K, Zipfel CM, Bansal S, Weinberger DM. (2022). Trends in non-COVID-19 hospitalizations prior to and during the COVID-19 pandemic period, United States, 2017-2021. Nature communications, 13(1)
Perniciaro S, van der Linden M, Weinberger DM. (2022). Re-emergence of Invasive Pneumococcal Disease in Germany during the Spring and Summer of 2021. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Ryman J, Weaver J, Hu T, Weinberger DM, Yee KL, Sachs JR. (2022). Predicting vaccine effectiveness against invasive pneumococcal disease in children using immunogenicity data. NPJ vaccines, 7(1)
Chaguza C, Coppi A, Earnest R, Ferguson D, Kerantzas N, Warner F, Young HP, Breban MI, Billig K, Koch RT, Pham K, Kalinich CC, Ott IM, Fauver JR, Hahn AM, Tikhonova IR, Castaldi C, De Kumar B, Pettker CM, Warren JL, Weinberger DM, Landry ML, Peaper DR, Schulz W, Vogels CBF, Grubaugh ND. (2022). Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons. Med (New York, N.Y.)
Prunas O, Weinberger DM, Pitzer VE, Gazit S, Patalon T. (2022). Waning Effectiveness of the BNT162b2 Vaccine Against Infection in Adolescents. medRxiv : the preprint server for health sciences
Shioda K, Cai J, Warren JL, Weinberger DM. (2021). Incorporating Information on Control Diseases Across Space and Time to Improve Estimation of the Population-level Impact of Vaccines. Epidemiology (Cambridge, Mass.), 32(3)
Zheng Z, Pitzer VE, Shapiro ED, Bont LJ, Weinberger DM. (2021). Estimation of the Timing and Intensity of Reemergence of Respiratory Syncytial Virus Following the COVID-19 Pandemic in the US. JAMA network open, 4(12)
Patalon T, Gazit S, Pitzer VE, Prunas O, Warren JL, Weinberger DM. (2021). Odds of Testing Positive for SARS-CoV-2 Following Receipt of 3 vs 2 Doses of the BNT162b2 mRNA Vaccine. JAMA internal medicine
Cassell K, Kjelsø C, Weinberger DM, Uldum SA. (2021). infection: a Danish national surveillance study. Thorax
Artin B, Pitzer VE, Weinberger DM. (2021). Assessment and optimization of respiratory syncytial virus prophylaxis in Connecticut, 1996-2013. Scientific reports, 11(1)
Ehrlich HY, Bei AK, Weinberger DM, Warren JL, Parikh S. (2021). Mapping partner drug resistance to guide antimalarial combination therapy policies in sub-Saharan Africa. Proceedings of the National Academy of Sciences of the United States of America, 118(29)
Kleynhans J, Tempia S, Shioda K, von Gottberg A, Weinberger DM, Cohen C. (2021). Estimated impact of the pneumococcal conjugate vaccine on pneumonia mortality in South Africa, 1999 through 2016: An ecological modelling study. PLoS medicine, 18(2)
Danino D, Ben-Shimol S, Van Der Beek BA, Givon-Lavi N, Avni YS, Greenberg D, Weinberger DM, Dagan R. (2021). Decline in Pneumococcal Disease in Young Children during the COVID-19 Pandemic in Israel Associated with Suppression of seasonal Respiratory Viruses, despite Persistent Pneumococcal Carriage: A Prospective Cohort Study. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Sharma R, Kuohn LR, Weinberger DM, Warren JL, Sansing LH, Jasne A, Falcone G, Dhand A, Sheth KN. (2021). Excess Cerebrovascular Mortality in the United States During the COVID-19 Pandemic. Stroke
Lajous M, Huerta-Gutiérrez R, Kennedy J, Olson DR, Weinberger DM. (2021). Excess Deaths in Mexico City and New York City During the COVID-19 Pandemic, March to August 2020. American journal of public health
Prunas O, Weinberger DM, Medini D, Tizzoni M, Argante L. (2021). Evaluating the Impact of Meningococcal Vaccines With Synthetic Controls. American journal of epidemiology
Pitzer VE, Chitwood M, Havumaki J, Menzies NA, Perniciaro S, Warren JL, Weinberger DM, Cohen T. (2021). The Impact of Changes in Diagnostic Testing Practices on Estimates of COVID-19 Transmission in the United States. American journal of epidemiology
Brackney MM, Weinberger DM, Higgins K, Meek J, Niccolai LM. (2021). Trends in Precancerous Cervical Lesions by Area-Based Measures of Poverty, Race, and Ethnicity, Connecticut, 2008-2018. Public health reports (Washington, D.C. : 1974)
Zheng Z, Pitzer VE, Warren JL, Weinberger DM. (2021). Community factors associated with local epidemic timing of respiratory syncytial virus: A spatiotemporal modeling study. Science advances, 7(26)
Arguedas A, Trzci?ski K, O'Brien KL, Ferreira DM, Wyllie AL, Weinberger D, Danon L, Pelton SI, Azzari C, Hammitt LL, Sá-Leão R, Brandileone MC, Saha S, Suaya J, Isturiz R, Jodar L, Gessner BD. (2020). Upper Respiratory Tract Colonization With Streptococcus pneumoniae in Adults. Expert review of vaccines
Woolf SH, Chapman DA, Sabo RT, Weinberger DM, Hill L. (2020). Excess Deaths From COVID-19 and Other Causes, March-April 2020. JAMA
Wyllie AL, Warren JL, Regev-Yochay G, Givon-Lavi N, Dagan R, Weinberger DM. (2020). Serotype patterns of pneumococcal disease in adults are correlated with carriage patterns in older children. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Andersen MA, Niemann CU, Rostgaard K, Dalby T, Sørrig R, Weinberger DM, Hjalgrim H, Harboe ZB. (2020). Differences and Temporal Changes in Risk of Invasive Pneumococcal Disease in Adults with Hematological Malignancies: Results from a Nationwide 16-Year Cohort Study. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Pokutnaya D, Molaei G, Weinberger DM, Vossbrinck CR, Diaz AJ. (2020). Prevalence of Infection and Co-Infection and Presence of Rickettsial Endosymbionts in Ixodes Scapularis (Acari: Ixodidae) in Connecticut, USA. The Journal of parasitology, 106(1)
de Oliveira LH, Shioda K, Valenzuela MT, Janusz CB, Rearte A, Sbarra AN, Warren JL, Toscano CM, Weinberger DM,. (2020). Declines in pneumonia mortality following the introduction of pneumococcal conjugate vaccines in Latin American and Caribbean countries. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Jimbo Sotomayor R, Toscano CM, Sánchez Choez X, Vilema Ortíz M, Rivas Condo J, Ghisays G, Haneuse S, Weinberger DM, McGee G, de Oliveira LH. (2020). Impact of pneumococcal conjugate vaccine on pneumonia hospitalization and mortality in children and elderly in Ecuador: Time series analyses. Vaccine
Knight JR, Dunne EM, Mulholland EK, Saha S, Satzke C, Tothpal A, Weinberger DM. (2020). Determining the serotype composition of mixed samples of pneumococcus using whole-genome sequencing. Microbial genomics
Shioda K, Toscano CM, Valenzuela MT, Huarcaya WV, Warren JL, Weinberger DM, de Oliveira LH. (2020). Impact of pneumococcal conjugate vaccine uptake on childhood pneumonia mortality across income levels in Brazil, Colombia, and Peru. Gates open research, (4)
Reyburn R, Tuivaga E, Nguyen CD, Ratu FT, Nand D, Kado J, Tikoduadua L, Jenkins K, de Campo M, Kama M, Devi R, Rafai E, Weinberger DM, Mulholland EK, Russell FM. (2020). Effect of ten-valent pneumococcal conjugate vaccine introduction on pneumonia hospital admissions in Fiji: a time-series analysis. The Lancet. Global health
Weinberger DM, Warren JL. (2020). Estimating the power to detect a change caused by a vaccine from time series data. Gates open research, (4)
Peccia J, Zulli A, Brackney DE, Grubaugh ND, Kaplan EH, Casanovas-Massana A, Ko AI, Malik AA, Wang D, Wang M, Warren JL, Weinberger DM, Arnold W, Omer SB. (2020). Measurement of SARS-CoV-2 RNA in wastewater tracks community infection dynamics. Nature biotechnology
Weinberger DM, Cohen T, Crawford FW, Mostashari F, Olson D, Pitzer VE, Reich NG, Russi M, Simonsen L, Watkins A, Viboud C. (2020). Estimating the early death toll of COVID-19 in the United States. bioRxiv : the preprint server for biology
Perniciaro SR, Weinberger DM. (2020). Variations in state-level SARS-COV-2 testing recommendations in the United States, March-July 2020. medRxiv : the preprint server for health sciences
Shioda K, Weinberger DM, Mori M. (2020). Navigating Through Health Care Data Disrupted by the COVID-19 Pandemic. JAMA internal medicine, 180(12)
Woolf SH, Chapman DA, Sabo RT, Weinberger DM, Hill L, Taylor DDH. (2020). Excess Deaths From COVID-19 and Other Causes, March-July 2020. JAMA, 324(15)
Phillips MT, Warren JL, Givon-Lavi N, Tothpal A, Regev-Yochay G, Dagan R, Weinberger DM. (2020). Evaluating post-vaccine expansion patterns of pneumococcal serotypes. Vaccine, 38(49)
Warren JL, Weinberger DM. (2020). Estimating serotype-specific efficacy of pneumococcal conjugate vaccines using hierarchical models. Epidemiology (Cambridge, Mass.)
Watkins AE, Fenichel EP, Weinberger DM, Vogels CBF, Brackney DE, Casanovas-Massana A, Campbell M, Fournier J, Bermejo S, Datta R, Dela Cruz CS, Farhadian SF, Iwasaki A, Ko AI, Grubaugh ND, Wyllie AL. (2020). Pooling saliva to increase SARS-CoV-2 testing capacity. medRxiv : the preprint server for health sciences
Weinberger DM, Chen J, Cohen T, Crawford FW, Mostashari F, Olson D, Pitzer VE, Reich NG, Russi M, Simonsen L, Watkins A, Viboud C. (2020). Estimation of Excess Deaths Associated With the COVID-19 Pandemic in the United States, March to May 2020. JAMA internal medicine, 180(10)
Schuck-Paim C, Taylor RJ, Alonso WJ, Weinberger DM, Simonsen L. (2019). Effect of pneumococcal conjugate vaccine introduction on childhood pneumonia mortality in Brazil: a retrospective observational study. The Lancet. Global health, 7(2)
Tóthpál A, Desobry K, Joshi SS, Wyllie AL, Weinberger DM. (2019). Variation of growth characteristics of pneumococcus with environmental conditions. BMC microbiology, 19(1)
Briskin EA, Casanovas-Massana A, Ryff KR, Morales-Estrada S, Hamond C, Perez-Rodriguez NM, Benavidez KM, Weinberger DM, Castro-Arellano I, Wunder EA, Sharp TM, Rivera-Garcia B, Ko AI. (2019). Seroprevalence, Risk Factors, and Rodent Reservoirs of Leptospirosis in an Urban Community of Puerto Rico, 2015. The Journal of infectious diseases, 220(9)
Joshi SS, Al-Mamun MA, Weinberger DM. (2019). Correlates of non-random patterns of serotype switching in pneumococcus. The Journal of infectious diseases
Cassell K, Gacek P, Rabatsky-Ehr T, Petit S, Cartter M, Weinberger DM. (2019). Estimating the True Burden of Legionnaires' Disease. American journal of epidemiology, 188(9)
Weinberger DM, Shapiro ED. (2019). Pneumococcal Vaccines for Adults: What's Next?. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Weinberger DM, Pitzer VE, Regev-Yochay G, Givon-Lavi N, Dagan R. (2018). Association Between the Decline in Pneumococcal Disease in Unimmunized Adults and Vaccine-Derived Protection Against Colonization in Toddlers and Preschool-Aged Children. American journal of epidemiology, 188(1)
Shioda K, Schuck-Paim C, Taylor RJ, Lustig R, Simonsen L, Warren JL, Weinberger DM. (2018). Challenges in Estimating the Impact of Vaccination with Sparse Data. Epidemiology (Cambridge, Mass.), 30(1)
Cassell K, Gacek P, Warren JL, Raymond PA, Cartter M, Weinberger DM. (2018). Reply to Rucinski et al. The Journal of infectious diseases, 218(4)
Weinberger DM, Warren JL, Dalby T, Shapiro ED, Valentiner-Branth P, Slotved HC, Harboe ZB. (2019). Differences in the Impact of Pneumococcal Serotype Replacement in Individuals With and Without Underlying Medical Conditions. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69(1)
Weinberger DM, Shapiro ED. (2019). Prevention of Pneumococcal Infections in Adults Using Conjugate Vaccines: No Easy Answers. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69(1)
Colombe S, Togami E, Gelaw F, Antillón M, Fuentes R, Weinberger DM. (2017). Trends and correlates of cystic echinococcosis in Chile: 2001-2012. PLoS neglected tropical diseases, 11(9)
Antillón M, Warren JL, Crawford FW, Weinberger DM, Kürüm E, Pak GD, Marks F, Pitzer VE. (2017). The burden of typhoid fever in low- and middle-income countries: A meta-regression approach. PLoS neglected tropical diseases, 11(2)
Weinberger DM, Harboe ZB, Shapiro ED. (2017). Developing Better Pneumococcal Vaccines for Adults. JAMA internal medicine, 177(3)
Niccolai LM, Meek JI, Brackney M, Hadler JL, Sosa LE, Weinberger DM. (2017). Declines in Human Papillomavirus (HPV)-Associated High-Grade Cervical Lesions After Introduction of HPV Vaccines in Connecticut, United States, 2008-2015. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 65(6)
Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE. (2017). Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead. Proceedings. Biological sciences, 284(1860)
Lewnard JA, Givon-Lavi N, Weinberger DM, Lipsitch M, Dagan R. (2017). Pan-serotype Reduction in Progression of Streptococcus pneumoniae to Otitis Media After Rollout of Pneumococcal Conjugate Vaccines. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 65(11)
Warren JL, Shioda K, Kürüm E, Schuck-Paim C, Lustig R, Taylor RJ, Simonsen L, Weinberger DM. (2017). Impact of Pneumococcal Conjugate Vaccines on Pneumonia Hospitalizations in High- and Low-Income Subpopulations in Brazil. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 65(11)
Weinberger DM. (2017). Filling evidence gaps on the impact of pneumococcal vaccines. The Lancet. Infectious diseases, 17(9)
Cassell K, Gacek P, Warren JL, Raymond PA, Cartter M, Weinberger DM. (2018). Association Between Sporadic Legionellosis and River Systems in Connecticut. The Journal of infectious diseases, 217(2)
Bruhn CA, Hetterich S, Schuck-Paim C, Kürüm E, Taylor RJ, Lustig R, Shapiro ED, Warren JL, Simonsen L, Weinberger DM. (2017). Estimating the population-level impact of vaccines using synthetic controls. Proceedings of the National Academy of Sciences of the United States of America, 114(7)
Kürüm E, Warren JL, Schuck-Paim C, Lustig R, Lewnard JA, Fuentes R, Bruhn CAW, Taylor RJ, Simonsen L, Weinberger DM. (2017). Bayesian Model Averaging with Change Points to Assess the Impact of Vaccination and Public Health Interventions. Epidemiology (Cambridge, Mass.), 28(6)
Warren JL, Pingali SC, Weinberger DM. (2016). Spatial Variability in the Persistence of Pneumococcal Conjugate Vaccine-targeted Pneumococcal Serotypes Among Adults. Epidemiology (Cambridge, Mass.), 28(1)
Lewnard JA, Huppert A, Givon-Lavi N, Pettigrew MM, Regev-Yochay G, Dagan R, Weinberger DM. (2016). Density, Serotype Diversity, and Fitness of Streptococcus pneumoniae in Upper Respiratory Tract Cocolonization With Nontypeable Haemophilus influenzae. The Journal of infectious diseases, 214(9)
Weinberger DM, Grant LR, Weatherholtz RC, Warren JL, O'Brien KL, Hammitt LL. (2016). Relating Pneumococcal Carriage Among Children to Disease Rates Among Adults Before and After the Introduction of Conjugate Vaccines. American journal of epidemiology, 183(11)
Noveroske DB, Warren JL, Pitzer VE, Weinberger DM. (2016). Local variations in the timing of RSV epidemics. BMC infectious diseases, 16(1)
Bruhn CA, Schuck-Paim C, Kürüm E, Taylor RJ, Simonsen L, Weinberger DM. (2017). Improving Assessments of Population-level Vaccine Impact. Epidemiology (Cambridge, Mass.), 28(2)
Schuck-Paim C, Taylor RJ, Simonsen L, Lustig R, Kürüm E, Bruhn CA, Weinberger DM. (2017). Challenges to estimating vaccine impact using hospitalization data. Vaccine, 35(1)
Pingali SC, Warren JL, Mead AM, Sharova N, Petit S, Weinberger DM. (2016). Association Between Local Pediatric Vaccination Rates and Patterns of Pneumococcal Disease in Adults. The Journal of infectious diseases, 213(4)
Lewnard JA, Givon-Lavi N, Huppert A, Pettigrew MM, Regev-Yochay G, Dagan R, Weinberger DM. (2016). Epidemiological Markers for Interactions Among Streptococcus pneumoniae, Haemophilus influenzae, and Staphylococcus aureus in Upper Respiratory Tract Carriage. The Journal of infectious diseases, 213(10)
Weinberger DM, Warren JL, Steiner CA, Charu V, Viboud C, Pitzer VE. (2015). Reduced-Dose Schedule of Prophylaxis Based on Local Data Provides Near-Optimal Protection Against Respiratory Syncytial Virus. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 61(4)
Trzciński K, Li Y, Weinberger DM, Thompson CM, Cordy D, Bessolo A, Malley R, Lipsitch M. (2015). Effect of Serotype on Pneumococcal Competition in a Mouse Colonization Model. MBio, 6(5)
Weinberger DM, Bruhn CA, Shapiro ED. (2015). Vaccine against Pneumococcal Pneumonia in Adults. The New England journal of medicine, 373(1)
Weinberger DM, Klugman KP, Steiner CA, Simonsen L, Viboud C. (2014). Association between respiratory syncytial virus activity and pneumococcal disease in infants: a time series analysis of US hospitalization data. PLoS medicine, 12(1)
Lewnard JA, Jirmanus L, Júnior NN, Machado PR, Glesby MJ, Ko AI, Carvalho EM, Schriefer A, Weinberger DM. (2014). Forecasting temporal dynamics of cutaneous leishmaniasis in Northeast Brazil. PLoS neglected tropical diseases, 8(10)
Weinberger DM, Shapiro ED. (2014). Pneumococcal conjugate vaccines for adults: reasons for optimism and for caution. Human vaccines & immunotherapeutics, 10(5)
Weinberger DM, Harboe ZB, Viboud C, Krause TG, Miller M, Mølbak K, Konradsen HB. (2013). Serotype-specific effect of influenza on adult invasive pneumococcal pneumonia. The Journal of infectious diseases, 208(8)
Shrestha S, Foxman B, Weinberger DM, Steiner C, Viboud C, Rohani P. (2013). Identifying the interaction between influenza and pneumococcal pneumonia using incidence data. Science translational medicine, 5(191)
Weinberger DM, Harboe ZB, Viboud C, Krause TG, Miller M, Mølbak K, Konradsen HB. (2014). Pneumococcal disease seasonality: incidence, severity and the role of influenza activity. The European respiratory journal, 43(3)
Weinberger DM, Givon-Lavi N, Shemer-Avni Y, Bar-Ziv J, Alonso WJ, Greenberg D, Dagan R. (2013). Influence of pneumococcal vaccines and respiratory syncytial virus on alveolar pneumonia, Israel. Emerging infectious diseases, 19(7)
Weinberger DM, Bruden DT, Grant LR, Lipsitch M, O'Brien KL, Pelton SI, Sanders EA, Feikin DR. (2013). Using pneumococcal carriage data to monitor postvaccination changes in invasive disease. American journal of epidemiology, 178(9)
Tan Y, Lam TT, Wu C, Lee SS, Viboud C, Zhang R, Weinberger DM. (2014). Increasing similarity in the dynamics of influenza in two adjacent subtropical Chinese cities following the relaxation of border restrictions. The Journal of general virology, 95(Pt 3)
Weinberger DM, Grant LR, Steiner CA, Weatherholtz R, Santosham M, Viboud C, O'Brien KL. (2013). Seasonal drivers of pneumococcal disease incidence: impact of bacterial carriage and viral activity. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 58(2)
Li Y, Weinberger DM, Thompson CM, Trzcinski K, Lipsitch M. (2013). Surface charge of Streptococcus pneumoniae predicts serotype distribution. Infection and immunity, 81(12)
Lipsitch M, Abdullahi O, DʼAmour A, Xie W, Weinberger DM, Tchetgen Tchetgen E, Scott JA. (2012). Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model. Epidemiology (Cambridge, Mass.), 23(4)
Weinberger DM, Krause TG, Mølbak K, Cliff A, Briem H, Viboud C, Gottfredsson M. (2012). Influenza epidemics in Iceland over 9 decades: changes in timing and synchrony with the United States and Europe. American journal of epidemiology, 176(7)
Weinberger DM, Harboe ZB, Flasche S, Scott JA, Lipsitch M. (2011). Prediction of serotypes causing invasive pneumococcal disease in unvaccinated and vaccinated populations. Epidemiology (Cambridge, Mass.), 22(2)
Weinberger DM, Malley R, Lipsitch M. (2011). Serotype replacement in disease after pneumococcal vaccination. Lancet, 378(9807)
Weinberger DM, Simonsen L, Jordan R, Steiner C, Miller M, Viboud C. (2012). Impact of the 2009 influenza pandemic on pneumococcal pneumonia hospitalizations in the United States. The Journal of infectious diseases, 205(3)
Weinberger DM, Harboe ZB, Sanders EA, Ndiritu M, Klugman KP, Rückinger S, Dagan R, Adegbola R, Cutts F, Johnson HL, O'Brien KL, Scott JA, Lipsitch M. (2010). Association of serotype with risk of death due to pneumococcal pneumonia: a meta-analysis. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 51(6)
Weinberger DM, Trzcinski K, Lu YJ, Bogaert D, Brandes A, Galagan J, Anderson PW, Malley R, Lipsitch M. (2009). Pneumococcal capsular polysaccharide structure predicts serotype prevalence. PLoS pathogens, 5(6)
Weinberger DM, Dagan R, Givon-Lavi N, Regev-Yochay G, Malley R, Lipsitch M. (2008). Epidemiologic evidence for serotype-specific acquired immunity to pneumococcal carriage. The Journal of infectious diseases, 197(11)
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