Truong VT, Lythe G, Vicini P, Yates JWT, Dubois VFS. (2026). A hybrid PKPD agent-based model of the tumour immune interaction: effects of anti-cancer combination therapy. Journal of pharmacokinetics and pharmacodynamics, 53(3)
Whaler B, Todd E, Shaw AB, Barr JN, Beauchemin CAA, Lythe G, Molina-París C, López-García M. (2026). Mechanistic mathematical model of the in vitro infection dynamics of Bunyamwera and Batai viruses including MOI-dependent shortening of the eclipse phase. ArXiv
Marshall M, Edwards AJ, Pinnell D, King MF, Noakes CJ, Elaldi N, Lythe G, López-García M. (2026). The Wells-Riley Model Revisited II: Parameter Uncertainty and Population Heterogeneity. Risk analysis : an official publication of the Society for Risk Analysis, 46(8)
D'Addiego J, Tishkova F, Mullojonova M, Dzhuraeva V, Lythe G, Dent S, Molina-París C, Leitner T, Hewson R. (2026). Genomic characterisation of Crimean-Congo haemorrhagic fever virus (CCHFV) in Tajikistan identifies a novel reassortant virus. PLoS neglected tropical diseases, 20(4)
Lin Q, Elaldi N, Yigit M, Yildiz B, Hewson R, López-García M, Lythe G, Pektas AN, Koksal B, Tasseten TN, Deniz A, Bedir H, Kiymaz YC, Vatansever Z, Molina-París C, Leitner T. (2026). Multiple Reassortments, Limited Geographic Spread, and Comparable Pathogenicity of Crimean-Congo Hemorrhagic Fever Viruses in Sivas Province, Türkiye. Journal of medical virology, 98(6)
Wigerblad G, Carruthers J, Ray S, Finnie T, Lythe G, Pyne S, Molina-París C, Kaplan MJ. (2025). A mathematical framework for human neutrophil state transitions inferred from single-cell RNA sequence data. Frontiers in immunology, (16)
Truong VT, Vicini P, Yates J, Dubois V, Lythe G. (2025). Stochastic pharmacodynamics of a heterogeneous tumour-cell population. Journal of pharmacokinetics and pharmacodynamics, 52(3)
Whaler B, Lythe G, Gillard JJ, Laws TR, Carruthers J, Finnie T, Molina-París C, López-García M. (2025). Mechanistic within-host mathematical model of inhalational anthrax. PLoS computational biology, 21(9)
Williams B, Paterson J, Rawsthorne-Manning HJ, Jeffrey PA, Gillard JJ, Lythe G, Laws TR, López-García M. (2024). Quantifying in vitro B. anthracis growth and PA production and decay: a mathematical modelling approach. NPJ systems biology and applications, 10(1)
Belluccini G, Lin Q, Williams B, Lou Y, Vatansever Z, López-García M, Lythe G, Leitner T, Romero-Severson E, Molina-París C. (2024). A story of viral co-infection, co-transmission and co-feeding in ticks: how to compute an invasion reproduction number. ArXiv
Dreiwi H, Feliciangeli F, Castro M, Lythe G, Molina-París C, López-García M. (2024). Stochastic journeys of cell progenies through compartments and the role of self-renewal, symmetric and asymmetric division. Scientific reports, 14(1)
Williams B, Carruthers J, Gillard JJ, Lythe G, Perelson AS, Ribeiro RM, Molina-París C, López-García M. (2024). The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface, 21(210)
Luque Duque D, Gaevert JA, Thomas PG, López-García M, Lythe G, Molina-París C. (2023). Multi-variate model of T cell clonotype competition and homeostasis. Scientific reports, 13(1)
Stana R, Lythe G. (2022). Diffusion in a disk with inclusion: Evaluating Green's functions. PloS one, 17(4)
Belluccini G, López-García M, Lythe G, Molina-París C. (2022). Counting generations in birth and death processes with competing Erlang and exponential waiting times. Scientific reports, 12(1)
Feliciangeli F, Dreiwi H, López-García M, Castro Ponce M, Molina-París C, Lythe G. (2022). Why are cell populations maintained via multiple compartments?. Journal of the Royal Society, Interface, 19(196)
Williams B, López-García M, Gillard JJ, Laws TR, Lythe G, Carruthers J, Finnie T, Molina-París C. (2021). A Stochastic Intracellular Model of Anthrax Infection With Spore Germination Heterogeneity. Frontiers in immunology, (12)
Wilmes S, Jeffrey PA, Martinez-Fabregas J, Hafer M, Fyfe PK, Pohler E, Gaggero S, López-García M, Lythe G, Taylor C, Guerrier T, Launay D, Mitra S, Piehler J, Molina-París C, Moraga I. (2021). Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses. eLife, (10)
Truong VT, Baverel PG, Lythe GD, Vicini P, Yates JWT, Dubois VFS. (2021). Step-by-step comparison of ordinary differential equation and agent-based approaches to pharmacokinetic-pharmacodynamic models. CPT: pharmacometrics & systems pharmacology
Castro M, Lythe G, Smit J, Molina-París C. (2021). Fusion and fission events regulate endosome maturation and viral escape. Scientific reports, 11(1)
Gaevert JA, Luque Duque D, Lythe G, Molina-París C, Thomas PG. (2021). Quantifying T Cell Cross-Reactivity: Influenza and Coronaviruses. Viruses, 13(9)
Locke M, Lythe G, López-García M, Muñoz-Fontela C, Carroll M, Molina-París C. (2021). Quantification of Type I Interferon Inhibition by Viral Proteins: Ebola Virus as a Case Study. Viruses, 13(12)
Carruthers J, Lythe G, López-García M, Gillard J, Laws TR, Lukaszewski R, Molina-París C. (2020). Stochastic dynamics of Francisella tularensis infection and replication. PLoS computational biology, 16(6)
Liao LE, Carruthers J, Smither SJ, , Weller SA, Williamson D, Laws TR, García-Dorival I, Hiscox J, Holder BP, Beauchemin CAA, Perelson AS, López-García M, Lythe G, Barr JN, Molina-París C. (2020). Quantification of Ebola virus replication kinetics in vitro. PLoS computational biology, 16(11)
de la Higuera L, López-García M, Castro M, Abourashchi N, Lythe G, Molina-París C. (2019). Fate of a Naive T Cell: A Stochastic Journey. Frontiers in immunology, (10)
Lythe G, Molina-París C. (2018). Some deterministic and stochastic mathematical models of naïve T-cell homeostasis. Immunological reviews, 285(1)
Castro M, López-García M, Lythe G, Molina-París C. (2018). First passage events in biological systems with non-exponential inter-event times. Scientific reports, 8(1)
Carruthers J, López-García M, Gillard JJ, Laws TR, Lythe G, Molina-París C. (2018). A Novel Stochastic Multi-Scale Model of Francisella tularensis Infection to Predict Risk of Infection in a Laboratory. Frontiers in microbiology, (9)
Gonçalves P, Ferrarini M, Molina-Paris C, Lythe G, Vasseur F, Lim A, Rocha B, Azogui O. (2017). A new mechanism shapes the naïve CD8(+) T cell repertoire: the selection for full diversity. Molecular immunology, (85)
Chu HH, Chan SW, Gosling JP, Blanchard N, Tsitsiklis A, Lythe G, Shastri N, Molina-París C, Robey EA. (2016). Continuous Effector CD8(+) T Cell Production in a Controlled Persistent Infection Is Sustained by a Proliferative Intermediate Population. Immunity, 45(1)
Donovan GM, Lythe G. (2016). T cell and reticular network co-dependence in HIV infection. Journal of theoretical biology, (395)
Castro M, Lythe G, Molina-París C, Ribeiro RM. (2016). Mathematics in modern immunology. Interface focus, 6(2)
Pham K, Shimoni R, Charnley M, Ludford-Menting MJ, Hawkins ED, Ramsbottom K, Oliaro J, Izon D, Ting SB, Reynolds J, Lythe G, Molina-Paris C, Melichar H, Robey E, Humbert PO, Gu M, Russell SM. (2015). Asymmetric cell division during T cell development controls downstream fate. The Journal of cell biology, 210(6)
Lythe G, Callard RE, Hoare RL, Molina-París C. (2016). How many TCR clonotypes does a body maintain?. Journal of theoretical biology, (389)
Castro M, van Santen HM, Férez M, Alarcón B, Lythe G, Molina-París C. (2014). Receptor Pre-Clustering and T cell Responses: Insights into Molecular Mechanisms. Frontiers in immunology, (5)
Sawicka M, Stritesky GL, Reynolds J, Abourashchi N, Lythe G, Molina-París C, Hogquist KA. (2014). From pre-DP, post-DP, SP4, and SP8 Thymocyte Cell Counts to a Dynamical Model of Cortical and Medullary Selection. Frontiers in immunology, (5)
Gillard JJ, Laws TR, Lythe G, Molina-París C. (2014). Modeling early events in Francisella tularensis pathogenesis. Frontiers in cellular and infection microbiology, (4)
Reynolds J, Amado IF, Freitas AA, Lythe G, Molina-París C. (2014). A mathematical perspective on CD4(+) T cell quorum-sensing. Journal of theoretical biology, (347)
Reynolds J, Coles M, Lythe G, Molina-París C. (2013). Mathematical Model of Naive T Cell Division and Survival IL-7 Thresholds. Frontiers in immunology, (4)
Lythe G, Mertens FG. (2003). Rice's ansatz for overdamped phi4 kinks at finite temperature. Physical review. E, Statistical, nonlinear, and soft matter physics, 67(2 Pt 2)
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