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Harry Hochheiser

Bio

Education

Affiliations

Preferred Pronouns

He/him/his

Personal Academic Website

https://gitlab.com/harryhoch

Topics of Interest/Expertise
 

Countries of Work/Collaboration

Projects

Papers

Kerr M, Borchering R, Rivadeneira AC, Contamin L, Funk S, Hochheiser H, Howerton E, Krystalli A, Shandross L, Reich NG. (2026). A Software Platform for Collaborative Infectious Disease Modeling. Nature health

Brouwer AF, Eisenberg MC, Dean NE, Hochheiser H, Huang P, Coyle JR, Rennert L. (2026). Infectious disease modeling for public health practice: projections, scenarios, and uncertainty in three phases of outbreak response. American journal of epidemiology

Hurwitz E, Connelly E, Sklerov M, Master H, Hochheiser H, Butzin-Dozier Z, Dunn J, Haendel MA. (2026). Population differences in wearable device wear time: Rescuing data to address biases and advance health equity. medRxiv : the preprint server for health sciences

Gallifant J, Chen S, Shin KY, Kellogg KC, Doyle PF, Guo J, Ye B, Warrington A, Zhai BK, Hadfield MJ, Gusev A, Ricciuti B, Christiani DC, Aerts HJ, Kann BH, Mak RH, Nelson TL, Nguyen P, Schoenfeld JD, Topaloglu U, Catalano P, Hochheiser H, Warner JL, Sharon E, Kozono DE, Savova GK, Bitterman DS. (2026). An agentic AI system enhances clinical detection of immunotherapy toxicities: a multi-phase validation study. medRxiv : the preprint server for health sciences

Shandross L, Howerton E, Contamin L, Hochheiser H, Krystalli A, , Reich NG, Ray EL. (2026). Multi-Model Ensembles in Infectious Disease and Public Health: Methods, Interpretation, and Implementation in R. Statistics in medicine, 45(1-2)

Aronis JM, Ye Y, Espino J, Michaels MG, Hochheiser H, Cooper GF. (2026). An evaluation of a Bayesian method to track outbreaks of known and novel influenza-like illnesses. Scientific reports

Hochheiser H, Kumar P. (2025). Using Surveillance Data to Estimate Infectious Disease Burden: Opportunities and Challenges. American journal of public health, 115(4)

Horvat CM, Klug J, Li R, Raffa J, Pollard T, Celi L, Plovock M, Emanuele K, Garver M, Hochheiser H, Clark R, Sackrowitz R, Angus D, Donadee C, Boeltz A, . (2025). Early Use of a Risk-Adjusted Mechanical Ventilation Digital Quality Measure Bundle in a Large Health System. Critical care medicine

Hochheiser H, Visweswaran S. (2025). In defense of empathic informatics. Journal of the American Medical Informatics Association : JAMIA

Kerr M, Borchering R, Rivadeneira AC, Contamin L, Funk S, Hochheiser H, Howerton E, Krystalli A, Shandross L, Reich NG. (2025). Coordinating collaborative infectious disease modeling projects with the hubverse. medRxiv : the preprint server for health sciences

Li R, Horvat CM, Nourelahi M, Claudio EP, Hammett J, Wainwright MS, Clark RSB, Au AK, Hochheiser H. (2025). Automated and interoperable methods for generalizable development of clinical machine-learning models for predicting neuromorbidity in critically ill children. medRxiv : the preprint server for health sciences

Yao J, Goldner E, Hochheiser H, Finan S, Levander J, Harris D, Groen PC, Buchbinder E, Bitterman D, Warner JL, Savova G. (2025). Systemic Anticancer Therapy Timelines Extraction From Electronic Medical Records Text: Algorithm Development and Validation. JMIR bioinformatics and biotechnology, (6)

Horvat CM, Barda AJ, Perez Claudio E, Au AK, Bauman A, Li Q, Li R, Munjal N, Wainwright MS, Boonchalermvichien T, Hochheiser H, Clark RSB. (2025). Interoperable Models for Identifying Critically Ill Children at Risk of Neurologic Morbidity. JAMA network open, 8(2)

Loo SL, Jung SM, Contamin L, Howerton E, Bents SJ, Hochheiser H, Runge MC, Smith CP, Carcelén EC, Yan K, Lemaitre JC, Przykucki E, McKee CD, Sato K, Hill AL, Chinazzi M, Davis JT, Bay C, Vespignani A, Chen S, Paul R, Janies D, Thill JC, Moore SM, Perkins TA, Srivastava A, Al Aawar M, Bi K, Bandekar SR, Bouchnita A, Fox SJ, Meyers LA, Porebski P, Venkatramanan S, Lewis B, Chen J, Marathe M, Ben-Nun M, Turtle J, Riley P, Shea K, Viboud C, Lessler J, Truelove S. (2025). Scenario Projections of COVID-19 Burden in the US, 2024-2025. JAMA network open, 8(9)

Hochheiser H, Klug J, Mathie T, Pollard TJ, Raffa JD, Ballard SL, Conrad EA, Edakalavan S, Joseph A, Alnomasy N, Nutman S, Hill V, Kapoor S, Claudio EP, Kravchenko OV, Li R, Nourelahi M, Diaz J, Taylor WM, Rooney SR, Woeltje M, Celi LA, Horvat CM. (2025). Raising awareness of potential biases in medical machine learning: Experience from a Datathon. PLOS digital health, 4(7)

King AJ, Horvat CM, Schlessinger D, Hochheiser H, Bui KV, Kennedy JN, Brant EB, Shalaby J, Angus DC, Liu VX, Seymour CW. (2025). A FHIR-Powered Python Implementation of the SENECA Algorithm for Sepsis Subtyping. Applied clinical informatics, 16(5)

Harrison EI, Kazmerski TM, Hochheiser HS, Sogawa Y, Kirkpatrick LA. (2024). Prescription patterns relevant to young people with epilepsy of childbearing potential. Epilepsy & behavior : E&B, (161)

Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C. (2024). Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. Bioinformatics (Oxford, England)

Runge MC, Shea K, Howerton E, Yan K, Hochheiser H, Rosenstrom E, Probert WJM, Borchering R, Marathe MV, Lewis B, Venkatramanan S, Truelove S, Lessler J, Viboud C. (2024). Scenario design for infectious disease projections: Integrating concepts from decision analysis and experimental design. Epidemics, (47)

Aronis JM, Ye Y, Espino J, Hochheiser H, Michaels MG, Cooper GF. (2024). A Bayesian System to Detect and Track Outbreaks of Influenza-Like Illnesses Including Novel Diseases. JMIR public health and surveillance

Horvat CM, Barda AJ, Claudio EP, Au AK, Bauman A, Li Q, Li R, Munjal N, Wainwright M, Boonchalermvichien T, Hochheiser H, Clark RSB. (2024). Development, External Validation, and Biomolecular Corroboration of Interoperable Models for Identifying Critically Ill Children at Risk of Neurologic Morbidity. medRxiv : the preprint server for health sciences

Jung SM, Loo SL, Howerton E, Contamin L, Smith CP, Carcelén EC, Yan K, Bents SJ, Levander J, Espino J, Lemaitre JC, Sato K, McKee CD, Hill AL, Chinazzi M, Davis JT, Mu K, Vespignani A, Rosenstrom ET, Rodriguez-Cartes SA, Ivy JS, Mayorga ME, Swann JL, España G, Cavany S, Moore SM, Perkins TA, Chen S, Paul R, Janies D, Thill JC, Srivastava A, Aawar MA, Bi K, Bandekar SR, Bouchnita A, Fox SJ, Meyers LA, Porebski P, Venkatramanan S, Adiga A, Hurt B, Klahn B, Outten J, Chen J, Mortveit H, Wilson A, Hoops S, Bhattacharya P, Machi D, Vullikanti A, Lewis B, Marathe M, Hochheiser H, Runge MC, Shea K, Truelove S, Viboud C, Lessler J. (2024). Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub. PLoS medicine, 21(4)

Sun Y, Gao Y, Bao R, Cooper GF, Espino J, Hochheiser H, Michaels MG, Aronis JM, Song C, Ye Y. (2024). Online Transfer Learning for RSV Case Detection. Proceedings. IEEE International Conference on Healthcare Informatics, (2024)

Loo SL, Howerton E, Contamin L, Smith CP, Borchering RK, Mullany LC, Bents S, Carcelen E, Jung SM, Bogich T, van Panhuis WG, Kerr J, Espino J, Yan K, Hochheiser H, Runge MC, Shea K, Lessler J, Viboud C, Truelove S. (2023). The US COVID-19 and Influenza Scenario Modeling Hubs: Delivering long-term projections to guide policy. Epidemics, (46)

Bitterman DS, Goldner E, Finan S, Harris D, Durbin EB, Hochheiser H, Warner JL, Mak RH, Miller T, Savova GK. (2023). An End-to-End Natural Language Processing System for Automatically Extracting Radiation Therapy Events From Clinical Texts. International journal of radiation oncology, biology, physics, 117(1)

Pokutnaya D, Childers B, Arcury-Quandt AE, Hochheiser H, Van Panhuis WG. (2023). An implementation framework to improve the transparency and reproducibility of computational models of infectious diseases. PLoS computational biology, 19(3)

Pokutnaya D, Van Panhuis WG, Childers B, Hawkins MS, Arcury-Quandt AE, Matlack M, Carpio K, Hochheiser H. (2023). Inter-rater reliability of the infectious disease modeling reproducibility checklist (IDMRC) as applied to COVID-19 computational modeling research. BMC infectious diseases, 23(1)

I Harrison E, Kirkpatrick LA, Hochheiser HS, Sogawa Y, Kazmerski TM. (2023). A retrospective textual analysis of sexual and reproductive health counseling for adolescent and young adult people with epilepsy of gestational capacity. Epilepsy & behavior : E&B, (145)

Harrison E, Kirkpatrick L, Harrison P, Kazmerski T, Sogawa Y, Hochheiser H. (2023). USE OF NATURAL LANGUAGE PROCESSING TO IDENTIFY SEXUAL AND REPRODUCTIVE HEALTH INFORMATION IN CLINICAL TEXT. Methods of information in medicine

Howerton E, Contamin L, Mullany LC, Qin M, Reich NG, Bents S, Borchering RK, Jung SM, Loo SL, Smith CP, Levander J, Kerr J, Espino J, van Panhuis WG, Hochheiser H, Galanti M, Yamana T, Pei S, Shaman J, Rainwater-Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Kaminsky J, Hulse JD, Lee EC, McKee CD, Hill A, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Rosenstrom ET, Ivy JS, Mayorga ME, Swann JL, España G, Cavany S, Moore S, Perkins A, Hladish T, Pillai A, Ben Toh K, Longini I Jr., Chen S, Paul R, Janies D, Thill JC, Bouchnita A, Bi K, Lachmann M, Fox SJ, Meyers LA, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Cadwell BL, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Truelove S, Runge MC, Shea K, Viboud C, Lessler J. (2023). Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty. Nature communications, 14(1)

Jung SM, Loo SL, Howerton E, Contamin L, Smith CP, Carcelén EC, Yan K, Bents SJ, Levander J, Espino J, Lemaitre JC, Sato K, McKee CD, Hill AL, Chinazzi M, Davis JT, Mu K, Vespignani A, Rosenstrom ET, Rodriguez-Cartes SA, Ivy JS, Mayorga ME, Swann JL, España G, Cavany S, Moore SM, Perkins A, Chen S, Paul R, Janies D, Thill JC, Srivastava A, Al Aawar M, Bi K, Bandekar SR, Bouchnita A, Fox SJ, Meyers LA, Porebski P, Venkatramanan S, Adiga A, Hurt B, Klahn B, Outten J, Chen J, Mortveit H, Wilson A, Hoops S, Bhattacharya P, Machi D, Vullikanti A, Lewis B, Marathe M, Hochheiser H, Runge MC, Shea K, Truelove S, Viboud C, Lessler J. (2023). Potential impact of annual vaccination with reformulated COVID-19 vaccines: lessons from the U.S. COVID-19 Scenario Modeling Hub. medRxiv : the preprint server for health sciences

Afiaz A, Ivanov AA, Chamberlin J, Hanauer D, Savonen CL, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C. (2023). Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?. ArXiv

Weisbord SD, Mor MK, Hochheiser H, Kim N, Ho PM, Bhatt DL, Fine MJ, Palevsky PM. (2023). Utilization and Outcomes of Clinically Indicated Invasive Cardiac Care in Veterans with Acute Coronary Syndrome and Chronic Kidney Disease. Journal of the American Society of Nephrology : JASN, 34(4)

Howerton E, Contamin L, Mullany LC, Qin M, Reich NG, Bents S, Borchering RK, Jung SM, Loo SL, Smith CP, Levander J, Kerr J, Espino J, van Panhuis WG, Hochheiser H, Galanti M, Yamana T, Pei S, Shaman J, Rainwater-Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Kaminsky J, Hulse JD, Lee EC, McKee C, Hill A, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Piontti APY, Vespignani A, Rosenstrom ET, Ivy JS, Mayorga ME, Swann JL, Espana G, Cavany S, Moore S, Perkins A, Hladish T, Pillai A, Toh KB, Longini I Jr., Chen S, Paul R, Janies D, Thill JC, Bouchnita A, Bi K, Lachmann M, Fox S, Meyers LA, , Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Cadwell BL, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Truelove S, Runge MC, Shea K, Viboud C, Lessler J. (2023). Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub. medRxiv : the preprint server for health sciences

Heredia-Negron F, Alamo-Rodriguez N, Oyola-Velazquez L, Nieves B, Carrasquillo K, Hochheiser H, Fristensky B, Daluz-Santana I, Fernandez-Repollet E, Roche-Lima A. (2023). Evaluation of AIML + HDR-A Course to Enhance Data Science Workforce Capacity for Hispanic Biomedical Researchers. International journal of environmental research and public health, 20(3)

Hochheiser H, Finan S, Yuan Z, Durbin EB, Jeong JC, Hands I, Rust D, Kavuluru R, Wu XC, Warner JL, Savova G. (2023). DeepPhe-CR: Natural Language Processing Software Services for Cancer Registrar Case Abstraction. JCO clinical cancer informatics, (7)

Borchering RK, Mullany LC, Howerton E, Chinazzi M, Smith CP, Qin M, Reich NG, Contamin L, Levander J, Kerr J, Espino J, Hochheiser H, Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Hulse JD, Kaminsky J, Lee EC, Hill AL, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Chen S, Paul R, Janies D, Thill JC, Galanti M, Yamana T, Pei S, Shaman J, España G, Cavany S, Moore S, Perkins A, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Shea K, Truelove SA, Runge MC, Viboud C, Lessler J. (2023). Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: A multi-model study. Lancet regional health. Americas, (17)

Mendonca EA, Richesson RL, Hochheiser H, Cooper DM, Bruck MN, Berner ES. (2022). Informatics education for translational research teams: An unrealized opportunity to strengthen the national research infrastructure. Journal of clinical and translational science, 6(1)

Truelove S, Smith CP, Qin M, Mullany LC, Borchering RK, Lessler J, Shea K, Howerton E, Contamin L, Levander J, Kerr J, Hochheiser H, Kinsey M, Tallaksen K, Wilson S, Shin L, Rainwater-Lovett K, Lemairtre JC, Dent J, Kaminsky J, Lee EC, Perez-Saez J, Hill A, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Orr M, Harrison G, Hurt B, Chen J, Vullikanti A, Marathe M, Hoops S, Bhattacharya P, Machi D, Chen S, Paul R, Janies D, Thill JC, Galanti M, Yamana TK, Pei S, Shaman JL, Healy JM, Slayton RB, Biggerstaff M, Johansson MA, Runge MC, Viboud C. (2022). Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination. eLife, (11)

Reich NG, Lessler J, Funk S, Viboud C, Vespignani A, Tibshirani RJ, Shea K, Schienle M, Runge MC, Rosenfeld R, Ray EL, Niehus R, Johnson HC, Johansson MA, Hochheiser H, Gardner L, Bracher J, Borchering RK, Biggerstaff M. (2022). Collaborative Hubs: Making the Most of Predictive Epidemic Modeling. American journal of public health

Visweswaran S, King AJ, Tajgardoon M, Calzoni L, Clermont G, Hochheiser H, Cooper GF. (2021). Evaluation of eye tracking for a decision support application. JAMIA open, 4(3)

King AJ, Calzoni L, Tajgardoon M, Cooper GF, Clermont G, Hochheiser H, Visweswaran S. (2021). A simple electronic medical record system designed for research. JAMIA open, 4(3)

Hochheiser H, Jing X, Garcia EA, Ayvaz S, Sahay R, Dumontier M, Banda JM, Beyan O, Brochhausen M, Draper E, Habiel S, Hassanzadeh O, Herrero-Zazo M, Hocum B, Horn J, LeBaron B, Malone DC, Nytrø Ø, Reese T, Romagnoli K, Schneider J, Zhang LY, Boyce RD. (2021). A Minimal Information Model for Potential Drug-Drug Interactions. Frontiers in pharmacology, (11)

Vukmirovic M, Yan X, Gibson KF, Gulati M, Schupp JC, DeIuliis G, Adams TS, Hu B, Mihaljinec A, Woolard TN, Lynn H, Emeagwali N, Herzog EL, Chen ES, Morris A, Leader JK, Zhang Y, Garcia JGN, Maier LA, Collman RG, Drake WP, Becich MJ, Hochheiser H, Wisniewski SR, Benos PV, Moller DR, Prasse A, Koth LL, Kaminski N, . (2021). Transcriptomics of bronchoalveolar lavage cells identifies new molecular endotypes of sarcoidosis. The European respiratory journal

Newman-Griffis D, Lehman JF, Rosé C, Hochheiser H. (2021). Translational NLP: A New Paradigm and General Principles for Natural Language Processing Research. Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting, (2021)

Newman-Griffis D, Sivaraman V, Perer A, Fosler-Lussier E, Hochheiser H. (2021). TextEssence: A Tool for Interactive Analysis of Semantic Shifts Between Corpora. Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting, (2021)

Hochheiser H, Valdez RS. (2020). Human-Computer Interaction, Ethics, and Biomedical Informatics. Yearbook of medical informatics, 29(1)

Calzoni L, Clermont G, Cooper GF, Visweswaran S, Hochheiser H. (2020). Graphical Presentations of Clinical Data in a Learning Electronic Medical Record. Applied clinical informatics, 11(4)

Tajgardoon M, Cooper GF, King AJ, Clermont G, Hochheiser H, Hauskrecht M, Sittig DF, Visweswaran S. (2020). Modeling physician variability to prioritize relevant medical record information. JAMIA open, 3(4)

Yuan Z, Finan S, Warner J, Savova G, Hochheiser H. (2020). Interactive Exploration of Longitudinal Cancer Patient Histories Extracted From Clinical Text. JCO clinical cancer informatics, (4)

Chu JH, Zang W, Vukmirovic M, Yan X, Adams T, DeIuliis G, Hu B, Mihaljinec A, Schupp JC, Becich MJ, Hochheiser H, Gibson KF, Chen ES, Morris A, Leader JK, Wisniewski SR, Zhang Y, Sciurba FC, Collman RG, Sandhaus R, Herzog EL, Patterson KC, Sauler M, Strange C, Kaminski N, . (2020). Gene coexpression networks reveal novel molecular endotypes in alpha-1 antitrypsin deficiency. Thorax

Barda AJ, Horvat CM, Hochheiser H. (2020). A qualitative research framework for the design of user-centered displays of explanations for machine learning model predictions in healthcare. BMC medical informatics and decision making, 20(1)

King AJ, Cooper GF, Clermont G, Hochheiser H, Hauskrecht M, Sittig DF, Visweswaran S. (2020). Leveraging Eye Tracking to Prioritize Relevant Medical Record Data: Comparative Machine Learning Study. Journal of medical Internet research, 22(4)

Trivedi G, Dadashzadeh ER, Handzel RM, Chapman WW, Visweswaran S, Hochheiser H. (2019). Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports. Applied clinical informatics, 10(4)

Cai C, Cooper GF, Lu KN, Ma X, Xu S, Zhao Z, Chen X, Xue Y, Lee AV, Clark N, Chen V, Lu S, Chen L, Yu L, Hochheiser HS, Jiang X, Wang QJ, Lu X. (2019). Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. PLoS computational biology, 15(7)

Warner JL, Dymshyts D, Reich CG, Gurley MJ, Hochheiser H, Moldwin ZH, Belenkaya R, Williams AE, Yang PC. (2019). HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model. Journal of biomedical informatics, (96)

Trivedi G, Hong C, Dadashzadeh ER, Handzel RM, Hochheiser H, Visweswaran S. (2019). Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods. International journal of medical informatics, (129)

Grizzle AJ, Hines LE, Malone DC, Kravchenko O, Hochheiser H, Boyce RD. (2019). Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment. Journal of biomedical informatics, (101)

Schnetz MP, Hochheiser HS, Danks DJ, Landsittel DP, Vogt KM, Ibinson JW, Whitehurst SL, McDermott SP, Duque MG, Kaynar AM. (2019). The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology. BMC medical research methodology, 19(1)

Wu DTY, Chen AT, Manning JD, Levy-Fix G, Backonja U, Borland D, Caban JJ, Dowding DW, Hochheiser H, Kagan V, Kandaswamy S, Kumar M, Nunez A, Pan E, Gotz D. (2019). Evaluating visual analytics for health informatics applications: a systematic review from the American Medical Informatics Association Visual Analytics Working Group Task Force on Evaluation. Journal of the American Medical Informatics Association : JAMIA, 26(4)

King AJ, Cooper GF, Clermont G, Hochheiser H, Hauskrecht M, Sittig DF, Visweswaran S. (2019). Using machine learning to selectively highlight patient information. Journal of biomedical informatics, (100)

Ogoe HA, Asamani JA, Hochheiser H, Douglas GP. (2018). Assessing Ghana's eHealth workforce: implications for planning and training. Human resources for health, 16(1)

King AJ, Cooper GF, Hochheiser H, Clermont G, Hauskrecht M, Visweswaran S. (2018). Using Machine Learning to Predict the Information Seeking Behavior of Clinicians Using an Electronic Medical Record System. AMIA ... Annual Symposium proceedings. AMIA Symposium, (2018)

Markam H, Hochheiser H, Kuntoro K, Notobroto HB. (2018). Exploring Midwives' Need and Intention to Adopt Electronic Integrated Antenatal Care. Perspectives in health information management, 15(Winter)

King AJ, Hochheiser H, Visweswaran S, Clermont G, Cooper GF. (2017). Eye-tracking for clinical decision support: A method to capture automatically what physicians are viewing in the EMR. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, (2017)

Calvitti A, Hochheiser H, Ashfaq S, Bell K, Chen Y, El Kareh R, Gabuzda MT, Liu L, Mortensen S, Pandey B, Rick S, Street RL Jr., Weibel N, Weir C, Agha Z. (2017). Physician activity during outpatient visits and subjective workload. Journal of biomedical informatics, (69)

Romagnoli KM, Nelson SD, Hines L, Empey P, Boyce RD, Hochheiser H. (2017). Information needs for making clinical recommendations about potential drug-drug interactions: a synthesis of literature review and interviews. BMC medical informatics and decision making, 17(1)

Trivedi G, Pham P, Chapman WW, Hwa R, Wiebe J, Hochheiser H. (2017). NLPReViz: an interactive tool for natural language processing on clinical text. Journal of the American Medical Informatics Association : JAMIA, 25(1)

Savova GK, Tseytlin E, Finan S, Castine M, Miller T, Medvedeva O, Harris D, Hochheiser H, Lin C, Chavan G, Jacobson RS. (2017). DeepPhe: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. Cancer research, 77(21)

McMurry JA, Köhler S, Washington NL, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, Xuan JN, Shefchek K, Vasilevsky NA, Yuan Z, Lewis SE, Hochheiser H, Groza T, Smedley D, Robinson PN, Mungall CJ, Haendel MA. (2016). Navigating the Phenotype Frontier: The Monarch Initiative. Genetics, 203(4)

Smedley D, Schubach M, Jacobsen JOB, Köhler S, Zemojtel T, Spielmann M, Jäger M, Hochheiser H, Washington NL, McMurry JA, Haendel MA, Mungall CJ, Lewis SE, Groza T, Valentini G, Robinson PN. (2016). A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease. American journal of human genetics, 99(3)

Stein CD, Xiao X, Levine S, Schleyer TK, Hochheiser H, Thyvalikakath TP. (2016). A prototype mobile application for triaging dental emergencies. Journal of the American Dental Association (1939), 147(10)

Hochheiser H, Castine M, Harris D, Savova G, Jacobson RS. (2016). An information model for computable cancer phenotypes. BMC medical informatics and decision making, 16(1)

Links AE, Draper D, Lee E, Guzman J, Valivullah Z, Maduro V, Lebedev V, Didenko M, Tomlin G, Brudno M, Girdea M, Dumitriu S, Haendel MA, Mungall CJ, Smedley D, Hochheiser H, Arnold AM, Coessens B, Verhoeven S, Bone W, Adams D, Boerkoel CF, Gahl WA, Sincan M. (2016). Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. Frontiers in medicine, (3)

Romagnoli KM, Boyce RD, Empey PE, Adams S, Hochheiser H. (2016). Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements. International journal of medical informatics, (86)

Mungall CJ, McMurry JA, Köhler S, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, Lewis SE, NguyenXuan J, Shefchek K, Vasilevsky N, Yuan Z, Washington N, Hochheiser H, Groza T, Smedley D, Robinson PN, Haendel MA. (2017). The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic acids research, 45(D1)

Haendel MA, Vasilevsky N, Brush M, Hochheiser HS, Jacobsen J, Oellrich A, Mungall CJ, Washington N, Köhler S, Lewis SE, Robinson PN, Smedley D. (2015). Disease insights through cross-species phenotype comparisons. Mammalian genome : official journal of the International Mammalian Genome Society, 26(9-10)

Landis-Lewis Z, Brehaut JC, Hochheiser H, Douglas GP, Jacobson RS. (2015). Computer-supported feedback message tailoring: theory-informed adaptation of clinical audit and feedback for learning and behavior change. Implementation science : IS, (10)

Strange C, Senior RM, Sciurba F, O'Neal S, Morris A, Wisniewski SR, Bowler R, Hochheiser HS, Becich MJ, Zhang Y, Leader JK, Methé BA, Kaminski N, Sandhaus RA, . (2015). Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol. Annals of the American Thoracic Society, 12(10)

Mungall CJ, Washington NL, Nguyen-Xuan J, Condit C, Smedley D, Köhler S, Groza T, Shefchek K, Hochheiser H, Robinson PN, Lewis SE, Haendel MA. (2015). Use of model organism and disease databases to support matchmaking for human disease gene discovery. Human mutation, 36(10)

King AJ, Cooper GF, Hochheiser H, Clermont G, Visweswaran S. (2015). Development and Preliminary Evaluation of a Prototype of a Learning Electronic Medical Record System. AMIA ... Annual Symposium proceedings. AMIA Symposium, (2015)

Ligons FM, Mello-Thoms C, Handler SM, Romagnoli KM, Hochheiser H. (2014). Assessing the impact of cognitive impairment on the usability of an electronic medication delivery unit in an assisted living population. International journal of medical informatics, 83(11)

Ayvaz S, Zhu Q, Hochheiser H, Brochhausen M, Horn J, Dumontier M, Samwald M, Boyce RD. (2014). Drug-drug interaction data source survey and linking. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, (2014)

Hochheiser H, Aronow BJ, Artinger K, Beaty TH, Brinkley JF, Chai Y, Clouthier D, Cunningham ML, Dixon M, Donahue LR, Fraser SE, Hallgrimsson B, Iwata J, Klein O, Marazita ML, Murray JC, Murray S, de Villena FP, Postlethwait J, Potter S, Shapiro L, Spritz R, Visel A, Weinberg SM, Trainor PA. (2011). The FaceBase Consortium: a comprehensive program to facilitate craniofacial research. Developmental biology, 355(2)

Hochheiser H, Yanowitz J. (2007). If I only had a brain: exploring mouse brain images in the Allen Brain Atlas. Biology of the cell, 99(7)

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