Henrik Salje

University Lecturer





Yang B, Borgert BA, Alto BW, Boohene CK, Brew J, Deutsch K, DeValerio JT, Dinglasan RR, Dixon D, Faella JM, Fisher-Grainger SL, Glass GE, Hayes R Jr., Hoel DF, Horton A, Janusauskaite A, Kellner B, Kraemer MUG, Lucas KJ, Medina J, Morreale R, Petrie W, Reiner RC Jr., Riles MT, Salje H, Smith DL, Smith JP, Solis A, Stuck J, Vasquez C, Williams KF, Xue RD, Cummings DAT. (2021). Modelling distributions of Aedes aegypti and Aedes albopictus using climate, host density and interspecies competition. PLoS neglected tropical diseases, 15(3)

Salje H, Alera MT, Chua MN, Hunsawong T, Ellison D, Srikiatkhachorn A, Jarman RG, Gromowski GD, Rodriguez-Barraquer I, Cauchemez S, Cummings DAT, Macareo L, Yoon IK, Fernandez S, Rothman AL. (2021). Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection. Nature medicine

McKee CD, Islam A, Luby SP, Salje H, Hudson PJ, Plowright RK, Gurley ES. (2021). The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats. Viruses, 13(2)

Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT. (2021). Reconstructing unseen transmission events to infer dengue dynamics from viral sequences. Nature communications, 12(1)

Nikolay B, Ribeiro Dos Santos G, Lipsitch M, Rahman M, Luby SP, Salje H, Gurley ES, Cauchemez S. (2021). Assessing the feasibility of Nipah vaccine efficacy trials based on previous outbreaks in Bangladesh. Vaccine

Andronico A, Tran Kiem C, Paireau J, Succo T, Bosetti P, Lefrancq N, Nacher M, Djossou F, Sanna A, Flamand C, Salje H, Rousseau C, Cauchemez S. (2021). Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana. Nature communications, 12(1)

Lefrancq N, Paireau J, Hozé N, Courtejoie N, Yazdanpanah Y, Bouadma L, Boelle PY, Chereau F, Salje H, Cauchemez S. (2021). Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis. The Lancet regional health. Europe, (5)

Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Trimmer-Smith L, Etienne V, Rodriguez-Barraquer I, Lessler J, Salje H, Burke DS, Wesolowski A, Cummings DAT. (2020). A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity. Nature communications, 11(1)

Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Rodriguez-Barraquer I, Lessler J, Salje H, Burke D, Wesolowski A, Cummings DAT. (2020). A systematic review of antibody mediated immunity to coronaviruses: antibody kinetics, correlates of protection, and association of antibody responses with severity of disease. medRxiv : the preprint server for health sciences

Clapham H, Hay J, Routledge I, Takahashi S, Choisy M, Cummings D, Grenfell B, Metcalf CJE, Mina M, Barraquer IR, Salje H, Tam CC. (2020). Seroepidemiologic Study Designs for Determining SARS-COV-2 Transmission and Immunity. Emerging infectious diseases, 26(9)

Salje H, Tran Kiem C, Lefrancq N, Courtejoie N, Bosetti P, Paireau J, Andronico A, Hozé N, Richet J, Dubost CL, Le Strat Y, Lessler J, Lévy-Bruhl D, Fontanet A, Opatowski L, Boelle PY, Cauchemez S. (2020). Estimating the burden of SARS-CoV-2 in France. Science (New York, N.Y.)

Abdur Rehman N, Salje H, Kraemer MUG, Subramanian L, Saif U, Chunara R. (2020). Quantifying the localized relationship between vector containment activities and dengue incidence in a real-world setting: A spatial and time series modelling analysis based on geo-located data from Pakistan. PLoS neglected tropical diseases, 14(5)

Nikolay B, Salje H, Khan AKMD, Sazzad HMS, Satter SM, Rahman M, Doan S, Knust B, Flora MS, Luby SP, Cauchemez S, Gurley ES. (2020). A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens: Lessons From Nipah Virus. The Journal of infectious diseases, 221(Supplement_4)

Hozé N, Salje H, Rousset D, Fritzell C, Vanhomwegen J, Bailly S, Najm M, Enfissi A, Manuguerra JC, Flamand C, Cauchemez S. (2020). Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers. Nature communications, 11(1)

O'Driscoll M, Ribeiro Dos Santos G, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H. (2020). Age-specific mortality and immunity patterns of SARS-CoV-2. Nature

Yoon IK, Srikiatkhachorn A, Alera MT, Fernandez S, Cummings DAT, Salje H. (2020). Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Azman AS, Lauer SA, Bhuiyan TR, Luquero FJ, Leung DT, Hegde ST, Harris JB, Paul KK, Khaton F, Ferdous J, Lessler J, Salje H, Qadri F, Gurley ES. (2020). O1 transmission in Bangladesh: insights from a nationally representative serosurvey. The Lancet. Microbe, 1(8)

Rodriguez-Barraquer I, Salje H, Cummings DA. (2019). Opportunities for improved surveillance and control of dengue from age-specific case data. Elife, (8)

Cousien A, Abel S, Monthieux A, Andronico A, Calmont I, Cervantes M, Césaire R, Gallian P, de Lamballerie X, Laouénan C, Najioullah F, Pierre-François S, Pircher M, Salje H, Ten Bosch QA, Cabié A, Cauchemez S. (2019). Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016. American journal of epidemiology, 188(7)

Ruchusatsawat K, Wongjaroen P, Posanacharoen A, Rodriguez-Barraquer I, Sangkitporn S, Cummings DAT, Salje H. (2019). Long-term circulation of Zika virus in Thailand: an observational study. The Lancet. Infectious diseases, 19(4)

Churakov M, Villabona-Arenas CJ, Kraemer MUG, Salje H, Cauchemez S. (2019). Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony. PLoS neglected tropical diseases, 13(4)

Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S. (2019). Differential mobility and local variation in infection attack rate. PLoS computational biology, 15(1)

Rodríguez-Barraquer I, Salje H, Cummings DA. (2019). Dengue pre-vaccination screening and positive predictive values. The Lancet. Infectious diseases, 19(2)

Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S. (2018). Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns. Epidemics, (25)

Azman AS, Luquero FJ, Salje H, Mbaïbardoum NN, Adalbert N, Ali M, Bertuzzo E, Finger F, Toure B, Massing LA, Ramazani R, Saga B, Allan M, Olson D, Leglise J, Porten K, Lessler J. (2018). Micro-Hotspots of Risk in Urban Cholera Epidemics. The Journal of infectious diseases, 218(7)

Katzelnick LC, Coello Escoto A, McElvany BD, Chávez C, Salje H, Luo W, Rodriguez-Barraquer I, Jarman R, Durbin AP, Diehl SA, Smith DJ, Whitehead SS, Cummings DAT. (2018). Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus. PLoS neglected tropical diseases, 12(10)

Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S. (2018). Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature, 557(7707)

Salje H, Lessler J, Maljkovic Berry I, Melendrez MC, Endy T, Kalayanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo LR, Yoon IK, Sangarsang A, Jarman RG, Cummings DA. (2017). Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size. Science (New York, N.Y.), 355(6331)

Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S. (2017). Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique. American journal of epidemiology, 186(10)

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DAT. (2017). Reply to Shanks and Brundage: Many plausible mechanisms of pandemic mortality disparities. Proceedings of the National Academy of Sciences of the United States of America, 114(18)

Nikolay B, Salje H, Sturm-Ramirez K, Azziz-Baumgartner E, Homaira N, Ahmed M, Iuliano AD, Paul RC, Rahman M, Hossain MJ, Luby SP, Cauchemez S, Gurley ES. (2017). Evaluating Hospital-Based Surveillance for Outbreak Detection in Bangladesh: Analysis of Healthcare Utilization Data. PLoS medicine, 14(1)

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM. (2016). Unraveling the drivers of MERS-CoV transmission. Proceedings of the National Academy of Sciences of the United States of America, 113(32)

Kraemer MUG, Faria NR, Reiner RC Jr., Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S. (2017). Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study. The Lancet. Infectious diseases, 17(3)

Morales I, Salje H, Saha S, Gurley ES. (2016). Seasonal Distribution and Climatic Correlates of Dengue Disease in Dhaka, Bangladesh. The American journal of tropical medicine and hygiene, 94(6)

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA. (2016). Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918. Proceedings of the National Academy of Sciences of the United States of America, 113(48)

Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP. (2016). Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study. Lancet, 387(10033)

Lessler J, Salje H, Grabowski MK, Cummings DA. (2016). Measuring Spatial Dependence for Infectious Disease Epidemiology. PLoS One, 11(5)

Salje H, Cummings DAT, Lessler J. (2016). Estimating infectious disease transmission distances using the overall distribution of cases. Epidemics, (17)

Lessler J, Chaisson LH, Kucirka LM, Bi Q, Grantz K, Salje H, Carcelen AC, Ott CT, Sheffield JS, Ferguson NM, Cummings DA, Metcalf CJ, Rodriguez-Barraquer I. (2016). Assessing the global threat from Zika virus. Science (New York, N.Y.), 353(6300)

Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S. (2016). How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study. Proceedings of the National Academy of Sciences of the United States of America, 113(47)

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA, . (2016). Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia. American journal of epidemiology, 183(7)

Rodriguez-Barraquer I, Salje H, Cummings DA. (2016). Dengue Vaccine in Regions of Endemic Disease. The New England journal of medicine, 374(14)

Lessler J, Azman AS, Grabowski MK, Salje H, Rodriguez-Barraquer I. (2016). Trends in the Mechanistic and Dynamic Modeling of Infectious Diseases. Current epidemiology reports, 3(3)

Reich NG, Lauer SA, Sakrejda K, Iamsirithaworn S, Hinjoy S, Suangtho P, Suthachana S, Clapham HE, Salje H, Cummings DA, Lessler J. (2016). Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand. PLoS neglected tropical diseases, 10(6)

Salje H, Cauchemez S, Alera MT, Rodriguez-Barraquer I, Thaisomboonsuk B, Srikiatkhachorn A, Lago CB, Villa D, Klungthong C, Tac-An IA, Fernandez S, Velasco JM, Roque VG Jr., Nisalak A, Macareo LR, Levy JW, Cummings D, Yoon IK. (2016). Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission. The Journal of infectious diseases, 213(4)

Clapham HE, Rodriguez-Barraquer I, Azman AS, Althouse BM, Salje H, Gibbons RV, Rothman AL, Jarman RG, Nisalak A, Thaisomboonsuk B, Kalayanarooj S, Nimmannitya S, Vaughn DW, Green S, Yoon IK, Cummings DA. (2016). Dengue Virus (DENV) Neutralizing Antibody Kinetics in Children After Symptomatic Primary and Postprimary DENV Infection. The Journal of infectious diseases, 213(9)

Faye O, Andronico A, Faye O, Salje H, Boëlle PY, Magassouba N, Bah EI, Koivogui L, Diallo B, Diallo AA, Keita S, Konde MK, Fowler R, Fall G, Cauchemez S, Sall AA. (2015). Use of Viremia to Evaluate the Baseline Case Fatality Ratio of Ebola Virus Disease and Inform Treatment Studies: A Retrospective Cohort Study. PLoS medicine, 12(12)

Salje H, Rodríguez-Barraquer I, Rainwater-Lovett K, Nisalak A, Thaisomboonsuk B, Thomas SJ, Fernandez S, Jarman RG, Yoon IK, Cummings DA. (2014). Variability in dengue titer estimates from plaque reduction neutralization tests poses a challenge to epidemiological studies and vaccine development. PLoS neglected tropical diseases, 8(6)

Bhoomiboonchoo P, Gibbons RV, Huang A, Yoon IK, Buddhari D, Nisalak A, Chansatiporn N, Thipayamongkolgul M, Kalanarooj S, Endy T, Rothman AL, Srikiatkhachorn A, Green S, Mammen MP, Cummings DA, Salje H. (2014). The spatial dynamics of dengue virus in Kamphaeng Phet, Thailand. PLoS neglected tropical diseases, 8(9)

Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA. (2012). Revealing the microscale spatial signature of dengue transmission and immunity in an urban population. Proceedings of the National Academy of Sciences of the United States of America, 109(24)

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