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Henrik Salje

University Lecturer

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Papers

Ribeiro Dos Santos G, Durovni B, Saraceni V, Souza Riback TI, Pinto SB, Anders KL, Moreira LA, Salje H. (2022). Estimating the effect of the wMel release programme on the incidence of dengue and chikungunya in Rio de Janeiro, Brazil: a spatiotemporal modelling study. The Lancet. Infectious diseases

Lefrancq N, Bouchez V, Fernandes N, Barkoff AM, Bosch T, Dalby T, Åkerlund T, Darenberg J, Fabianova K, Vestrheim DF, Fry NK, González-López JJ, Gullsby K, Habington A, He Q, Litt D, Martini H, Piérard D, Stefanelli P, Stegger M, Zavadilova J, Armatys N, Landier A, Guillot S, Hong SL, Lemey P, Parkhill J, Toubiana J, Cauchemez S, Salje H, Brisse S. (2022). . Science translational medicine, 14(642)

García-Carreras B, Yang B, Grabowski MK, Sheppard LW, Huang AT, Salje H, Clapham HE, Iamsirithaworn S, Doung-Ngern P, Lessler J, Cummings DAT. (2022). Periodic synchronisation of dengue epidemics in Thailand over the last 5 decades driven by temperature and immunity. PLoS biology, 20(3)

Kyungah Lim J, Ridde V, Todagbe Agnandji S, Lell B, Yaro S, Seung Yang J, Hoinard D, Weaver SC, Vanhomwegen J, Salje H, Yoon IK. (2022). Seroepidemiological reconstruction of long-term chikungunya virus circulation in Burkina Faso and Gabon. The Journal of infectious diseases

Huang AT, Takahashi S, Salje H, Wang L, Garcia-Carreras B, Anderson K, Endy T, Thomas S, Rothman AL, Klungthong C, Jones AR, Fernandez S, Iamsirithaworn S, Doung-Ngern P, Rodriguez-Barraquer I, Cummings DAT. (2022). Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand. Proceedings of the National Academy of Sciences of the United States of America, 119(20)

Ribeiro Dos Santos G, Buddhari D, Iamsirithaworn S, Khampaen D, Ponlawat A, Fansiri T, Farmer A, Fernandez S, Thomas S, Barraquer IR, Srikiatkhachorn A, Huang AT, Cummings DAT, Endy T, Rothman AL, Salje H, Anderson K. (2022). Individual, household and community drivers of dengue virus infection risk in Kamphaeng Phet province, Thailand. The Journal of infectious diseases

Christofferson RC, Wearing HJ, Turner EA, Walsh CS, Salje H, Tran-Kiem C, Cauchemez S. (2022). How do i bite thee? let me count the ways: Exploring the implications of individual biting habits of Aedes aegypti for dengue transmission. PLoS neglected tropical diseases, 16(10)

Nemoto T, Aubry M, Teissier Y, Paul R, Cao-Lormeau VM, Salje H, Cauchemez S. (2022). Reconstructing long-term dengue virus immunity in French Polynesia. PLoS neglected tropical diseases, 16(10)

Clark J, Stolk WA, Basáñez MG, Coffeng LE, Cucunubá ZM, Dixon MA, Dyson L, Hampson K, Marks M, Medley GF, Pollington TM, Prada JM, Rock KS, Salje H, Toor J, Hollingsworth TD. (2022). How modelling can help steer the course set by the World Health Organization 2021-2030 roadmap on neglected tropical diseases. Gates open research, (5)

Huang AT, Salje H, Escoto AC, Chowdhury N, Chávez C, Garcia-Carreras B, Rutvisuttinunt W, Maljkovic Berry I, Gromowski GD, Wang L, Klungthong C, Thaisomboonsuk B, Nisalak A, Trimmer-Smith LM, Rodriguez-Barraquer I, Ellison DW, Jones AR, Fernandez S, Thomas SJ, Smith DJ, Jarman R, Whitehead SS, Cummings DAT, Katzelnick LC. (2022). Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand. PLoS pathogens, 18(5)

Paireau J, Mailles A, Eisenhauer C, de Laval F, Delon F, Bosetti P, Salje H, Pontiès V, Cauchemez S. (2022). Early chains of transmission of COVID-19 in France, January to March 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 27(6)

Metcalf CJE, Paireau J, O'Driscoll M, Pivette M, Hubert B, Pontais I, Nickbakhsh S, Cummings DAT, Cauchemez S, Salje H. (2022). Comparing the age and sex trajectories of SARS-CoV-2 morbidity and mortality with other respiratory pathogens. Royal Society open science, 9(6)

Wiens KE, Jauregui B, Arnold BF, Banke K, Wade D, Hayford K, Costero-Saint Denis A, Hall RH, Salje H, Rodriguez-Barraquer I, Azman AS, Vernet G, Leung DT, . (2022). Building an integrated serosurveillance platform to inform public health interventions: Insights from an experts' meeting on serum biomarkers. PLoS neglected tropical diseases, 16(10)

Tran Kiem C, Bosetti P, Paireau J, Crépey P, Salje H, Lefrancq N, Fontanet A, Benamouzig D, Boëlle PY, Desenclos JC, Opatowski L, Cauchemez S. (2021). SARS-CoV-2 transmission across age groups in France and implications for control. Nature communications, 12(1)

Yang B, Borgert BA, Alto BW, Boohene CK, Brew J, Deutsch K, DeValerio JT, Dinglasan RR, Dixon D, Faella JM, Fisher-Grainger SL, Glass GE, Hayes R Jr., Hoel DF, Horton A, Janusauskaite A, Kellner B, Kraemer MUG, Lucas KJ, Medina J, Morreale R, Petrie W, Reiner RC Jr., Riles MT, Salje H, Smith DL, Smith JP, Solis A, Stuck J, Vasquez C, Williams KF, Xue RD, Cummings DAT. (2021). Modelling distributions of Aedes aegypti and Aedes albopictus using climate, host density and interspecies competition. PLoS neglected tropical diseases, 15(3)

Salje H, Alera MT, Chua MN, Hunsawong T, Ellison D, Srikiatkhachorn A, Jarman RG, Gromowski GD, Rodriguez-Barraquer I, Cauchemez S, Cummings DAT, Macareo L, Yoon IK, Fernandez S, Rothman AL. (2021). Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection. Nature medicine

McKee CD, Islam A, Luby SP, Salje H, Hudson PJ, Plowright RK, Gurley ES. (2021). The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats. Viruses, 13(2)

Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT. (2021). Reconstructing unseen transmission events to infer dengue dynamics from viral sequences. Nature communications, 12(1)

Azman AS, Paul KK, Bhuiyan TR, Koyuncu A, Salje H, Qadri F, Gurley ES. (2021). Hepatitis E in Bangladesh: Insights from a National Serosurvey. The Journal of infectious diseases

Nikolay B, Ribeiro Dos Santos G, Lipsitch M, Rahman M, Luby SP, Salje H, Gurley ES, Cauchemez S. (2021). Assessing the feasibility of Nipah vaccine efficacy trials based on previous outbreaks in Bangladesh. Vaccine

Katzelnick LC, Coello Escoto A, Huang AT, Garcia-Carreras B, Chowdhury N, Maljkovic Berry I, Chavez C, Buchy P, Duong V, Dussart P, Gromowski G, Macareo L, Thaisomboonsuk B, Fernandez S, Smith DJ, Jarman R, Whitehead SS, Salje H, Cummings DAT. (2021). Antigenic evolution of dengue viruses over 20 years. Science (New York, N.Y.), 374(6570)

Paireau J, Guillot S, Aït El Belghiti F, Matczak S, Trombert-Paolantoni S, Jacomo V, Taha MK, Salje H, Brisse S, Lévy-Bruhl D, Cauchemez S, Toubiana J. (2021). Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study. The Lancet. Infectious diseases

Flamand C, Alves Sarmento C, Enfissi A, Bailly S, Beillard E, Gaillet M, Michaud C, Servas V, Clement N, Perilhou A, Carage T, Musso D, Carod JF, Eustache S, Tourbillon C, Boizon E, James S, Djossou F, Salje H, Cauchemez S, Rousset D. (2021). Seroprevalence of anti-SARS-CoV-2 IgG at the first epidemic peak in French Guiana, July 2020. PLoS neglected tropical diseases, 15(11)

Andronico A, Tran Kiem C, Paireau J, Succo T, Bosetti P, Lefrancq N, Nacher M, Djossou F, Sanna A, Flamand C, Salje H, Rousseau C, Cauchemez S. (2021). Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana. Nature communications, 12(1)

Hozé N, Paireau J, Lapidus N, Tran Kiem C, Salje H, Severi G, Touvier M, Zins M, de Lamballerie X, Lévy-Bruhl D, Carrat F, Cauchemez S. (2021). Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study. The Lancet. Public health

O'Driscoll M, Salje H, Chang AY, Watson H. (2021). Arthralgia resolution rate following chikungunya virus infection. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Bailly S, Rousset D, Fritzell C, Hozé N, Ben Achour S, Berthelot L, Enfissi A, Vanhomwegen J, Salje H, Fernandes-Pellerin S, Saout M, Lavergne A, Manuguerra JC, Carod JF, Djossou F, Cauchemez S, Flamand C. (2021). Spatial Distribution and Burden of Emerging Arboviruses in French Guiana. Viruses, 13(7)

Moura A, Lefrancq N, Wirth T, Leclercq A, Borges V, Gilpin B, Dallman TJ, Frey J, Franz E, Nielsen EM, Thomas J, Pightling A, Howden BP, Tarr CL, Gerner-Smidt P, Cauchemez S, Salje H, Brisse S, Lecuit M, . (2021). main clinical clonal complex. Science advances, 7(49)

Badell E, Alharazi A, Criscuolo A, Almoayed KAA, Lefrancq N, Bouchez V, Guglielmini J, Hennart M, Carmi-Leroy A, Zidane N, Pascal-Perrigault M, Lebreton M, Martini H, Salje H, Toubiana J, Dureab F, Dhabaan G, Brisse S, . (2021). Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study. The Lancet. Microbe, 2(8)

Bosetti P, Huynh BT, Abdou AY, Sanchez M, Eisenhauer C, Courtejoie N, Accardo J, Salje H, Guillemot D, Moslonka-Lefebvre M, Boëlle PY, Béraud G, Cauchemez S, Opatowski L. (2021). Lockdown impact on age-specific contact patterns and behaviours, France, April 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26(48)

Tran Kiem C, Crépey P, Bosetti P, Levy Bruhl D, Yazdanpanah Y, Salje H, Boelle PY, Cauchemez S. (2021). Lockdown as a last resort option in case of COVID-19 epidemic rebound: a modelling study. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26(22)

Lefrancq N, Paireau J, Hozé N, Courtejoie N, Yazdanpanah Y, Bouadma L, Boelle PY, Chereau F, Salje H, Cauchemez S. (2021). Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis. The Lancet regional health. Europe, (5)

Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Trimmer-Smith L, Etienne V, Rodriguez-Barraquer I, Lessler J, Salje H, Burke DS, Wesolowski A, Cummings DAT. (2020). A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity. Nature communications, 11(1)

Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Rodriguez-Barraquer I, Lessler J, Salje H, Burke D, Wesolowski A, Cummings DAT. (2020). A systematic review of antibody mediated immunity to coronaviruses: antibody kinetics, correlates of protection, and association of antibody responses with severity of disease. medRxiv : the preprint server for health sciences

Clapham H, Hay J, Routledge I, Takahashi S, Choisy M, Cummings D, Grenfell B, Metcalf CJE, Mina M, Barraquer IR, Salje H, Tam CC. (2020). Seroepidemiologic Study Designs for Determining SARS-COV-2 Transmission and Immunity. Emerging infectious diseases, 26(9)

Salje H, Tran Kiem C, Lefrancq N, Courtejoie N, Bosetti P, Paireau J, Andronico A, Hozé N, Richet J, Dubost CL, Le Strat Y, Lessler J, Lévy-Bruhl D, Fontanet A, Opatowski L, Boelle PY, Cauchemez S. (2020). Estimating the burden of SARS-CoV-2 in France. Science (New York, N.Y.)

Abdur Rehman N, Salje H, Kraemer MUG, Subramanian L, Saif U, Chunara R. (2020). Quantifying the localized relationship between vector containment activities and dengue incidence in a real-world setting: A spatial and time series modelling analysis based on geo-located data from Pakistan. PLoS neglected tropical diseases, 14(5)

Nikolay B, Salje H, Khan AKMD, Sazzad HMS, Satter SM, Rahman M, Doan S, Knust B, Flora MS, Luby SP, Cauchemez S, Gurley ES. (2020). A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens: Lessons From Nipah Virus. The Journal of infectious diseases, 221(Supplement_4)

Hozé N, Salje H, Rousset D, Fritzell C, Vanhomwegen J, Bailly S, Najm M, Enfissi A, Manuguerra JC, Flamand C, Cauchemez S. (2020). Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers. Nature communications, 11(1)

O'Driscoll M, Ribeiro Dos Santos G, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H. (2020). Age-specific mortality and immunity patterns of SARS-CoV-2. Nature

Yoon IK, Srikiatkhachorn A, Alera MT, Fernandez S, Cummings DAT, Salje H. (2020). Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Azman AS, Lauer SA, Bhuiyan TR, Luquero FJ, Leung DT, Hegde ST, Harris JB, Paul KK, Khaton F, Ferdous J, Lessler J, Salje H, Qadri F, Gurley ES. (2020). O1 transmission in Bangladesh: insights from a nationally representative serosurvey. The Lancet. Microbe, 1(8)

Rodriguez-Barraquer I, Salje H, Cummings DA. (2019). Opportunities for improved surveillance and control of dengue from age-specific case data. Elife, (8)

Weaver AM, Gurley ES, Crabtree-Ide C, Salje H, Yoo EH, Mu L, Akter N, Ram PK. (2019). Air pollution dispersion from biomass stoves to neighboring homes in Mirpur, Dhaka, Bangladesh. BMC public health, 19(1)

Cousien A, Abel S, Monthieux A, Andronico A, Calmont I, Cervantes M, Césaire R, Gallian P, de Lamballerie X, Laouénan C, Najioullah F, Pierre-François S, Pircher M, Salje H, Ten Bosch QA, Cabié A, Cauchemez S. (2019). Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016. American journal of epidemiology, 188(7)

Hegde ST, Salje H, Sazzad HMS, Hossain MJ, Rahman M, Daszak P, Klena JD, Nichol ST, Luby SP, Gurley ES. (2019). Using healthcare-seeking behaviour to estimate the number of Nipah outbreaks missed by hospital-based surveillance in Bangladesh. International journal of epidemiology, 48(4)

Nikolay B, Salje H, Hossain MJ, Khan AKMD, Sazzad HMS, Rahman M, Daszak P, Ströher U, Pulliam JRC, Kilpatrick AM, Nichol ST, Klena JD, Sultana S, Afroj S, Luby SP, Cauchemez S, Gurley ES. (2019). Transmission of Nipah Virus - 14 Years of Investigations in Bangladesh. The New England journal of medicine, 380(19)

Salje H, Paul KK, Paul R, Rodriguez-Barraquer I, Rahman Z, Alam MS, Rahman M, Al-Amin HM, Heffelfinger J, Gurley E. (2019). Nationally-representative serostudy of dengue in Bangladesh allows generalizable disease burden estimates. eLife, (8)

Ruchusatsawat K, Wongjaroen P, Posanacharoen A, Rodriguez-Barraquer I, Sangkitporn S, Cummings DAT, Salje H. (2019). Long-term circulation of Zika virus in Thailand: an observational study. The Lancet. Infectious diseases, 19(4)

Churakov M, Villabona-Arenas CJ, Kraemer MUG, Salje H, Cauchemez S. (2019). Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony. PLoS neglected tropical diseases, 13(4)

Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S. (2019). Differential mobility and local variation in infection attack rate. PLoS computational biology, 15(1)

Rodríguez-Barraquer I, Salje H, Cummings DA. (2019). Dengue pre-vaccination screening and positive predictive values. The Lancet. Infectious diseases, 19(2)

Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S. (2018). Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns. Epidemics, (25)

Azman AS, Luquero FJ, Salje H, Mbaïbardoum NN, Adalbert N, Ali M, Bertuzzo E, Finger F, Toure B, Massing LA, Ramazani R, Saga B, Allan M, Olson D, Leglise J, Porten K, Lessler J. (2018). Micro-Hotspots of Risk in Urban Cholera Epidemics. The Journal of infectious diseases, 218(7)

Katzelnick LC, Coello Escoto A, McElvany BD, Chávez C, Salje H, Luo W, Rodriguez-Barraquer I, Jarman R, Durbin AP, Diehl SA, Smith DJ, Whitehead SS, Cummings DAT. (2018). Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus. PLoS neglected tropical diseases, 12(10)

Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S. (2018). Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature, 557(7707)

Salje H, Lessler J, Maljkovic Berry I, Melendrez MC, Endy T, Kalayanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo LR, Yoon IK, Sangarsang A, Jarman RG, Cummings DA. (2017). Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size. Science (New York, N.Y.), 355(6331)

Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S. (2017). Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique. American journal of epidemiology, 186(10)

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DAT. (2017). Reply to Shanks and Brundage: Many plausible mechanisms of pandemic mortality disparities. Proceedings of the National Academy of Sciences of the United States of America, 114(18)

Nikolay B, Salje H, Sturm-Ramirez K, Azziz-Baumgartner E, Homaira N, Ahmed M, Iuliano AD, Paul RC, Rahman M, Hossain MJ, Luby SP, Cauchemez S, Gurley ES. (2017). Evaluating Hospital-Based Surveillance for Outbreak Detection in Bangladesh: Analysis of Healthcare Utilization Data. PLoS medicine, 14(1)

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM. (2016). Unraveling the drivers of MERS-CoV transmission. Proceedings of the National Academy of Sciences of the United States of America, 113(32)

Kraemer MUG, Faria NR, Reiner RC Jr., Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S. (2017). Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study. The Lancet. Infectious diseases, 17(3)

Morales I, Salje H, Saha S, Gurley ES. (2016). Seasonal Distribution and Climatic Correlates of Dengue Disease in Dhaka, Bangladesh. The American journal of tropical medicine and hygiene, 94(6)

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA. (2016). Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918. Proceedings of the National Academy of Sciences of the United States of America, 113(48)

Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP. (2016). Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study. Lancet, 387(10033)

Lessler J, Salje H, Grabowski MK, Cummings DA. (2016). Measuring Spatial Dependence for Infectious Disease Epidemiology. PLoS One, 11(5)

Salje H, Cummings DAT, Lessler J. (2016). Estimating infectious disease transmission distances using the overall distribution of cases. Epidemics, (17)

Lessler J, Chaisson LH, Kucirka LM, Bi Q, Grantz K, Salje H, Carcelen AC, Ott CT, Sheffield JS, Ferguson NM, Cummings DA, Metcalf CJ, Rodriguez-Barraquer I. (2016). Assessing the global threat from Zika virus. Science (New York, N.Y.), 353(6300)

Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S. (2016). How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study. Proceedings of the National Academy of Sciences of the United States of America, 113(47)

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA, . (2016). Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia. American journal of epidemiology, 183(7)

Rodriguez-Barraquer I, Salje H, Cummings DA. (2016). Dengue Vaccine in Regions of Endemic Disease. The New England journal of medicine, 374(14)

Lessler J, Azman AS, Grabowski MK, Salje H, Rodriguez-Barraquer I. (2016). Trends in the Mechanistic and Dynamic Modeling of Infectious Diseases. Current epidemiology reports, 3(3)

Reich NG, Lauer SA, Sakrejda K, Iamsirithaworn S, Hinjoy S, Suangtho P, Suthachana S, Clapham HE, Salje H, Cummings DA, Lessler J. (2016). Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand. PLoS neglected tropical diseases, 10(6)

Salje H, Cauchemez S, Alera MT, Rodriguez-Barraquer I, Thaisomboonsuk B, Srikiatkhachorn A, Lago CB, Villa D, Klungthong C, Tac-An IA, Fernandez S, Velasco JM, Roque VG Jr., Nisalak A, Macareo LR, Levy JW, Cummings D, Yoon IK. (2016). Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission. The Journal of infectious diseases, 213(4)

Clapham HE, Rodriguez-Barraquer I, Azman AS, Althouse BM, Salje H, Gibbons RV, Rothman AL, Jarman RG, Nisalak A, Thaisomboonsuk B, Kalayanarooj S, Nimmannitya S, Vaughn DW, Green S, Yoon IK, Cummings DA. (2016). Dengue Virus (DENV) Neutralizing Antibody Kinetics in Children After Symptomatic Primary and Postprimary DENV Infection. The Journal of infectious diseases, 213(9)

Faye O, Andronico A, Faye O, Salje H, Boëlle PY, Magassouba N, Bah EI, Koivogui L, Diallo B, Diallo AA, Keita S, Konde MK, Fowler R, Fall G, Cauchemez S, Sall AA. (2015). Use of Viremia to Evaluate the Baseline Case Fatality Ratio of Ebola Virus Disease and Inform Treatment Studies: A Retrospective Cohort Study. PLoS medicine, 12(12)

Salje H, Rodríguez-Barraquer I, Rainwater-Lovett K, Nisalak A, Thaisomboonsuk B, Thomas SJ, Fernandez S, Jarman RG, Yoon IK, Cummings DA. (2014). Variability in dengue titer estimates from plaque reduction neutralization tests poses a challenge to epidemiological studies and vaccine development. PLoS neglected tropical diseases, 8(6)

Bhoomiboonchoo P, Gibbons RV, Huang A, Yoon IK, Buddhari D, Nisalak A, Chansatiporn N, Thipayamongkolgul M, Kalanarooj S, Endy T, Rothman AL, Srikiatkhachorn A, Green S, Mammen MP, Cummings DA, Salje H. (2014). The spatial dynamics of dengue virus in Kamphaeng Phet, Thailand. PLoS neglected tropical diseases, 8(9)

Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA. (2012). Revealing the microscale spatial signature of dengue transmission and immunity in an urban population. Proceedings of the National Academy of Sciences of the United States of America, 109(24)

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