Close
Hsiao-Han Chang

Research Associate

Education

Affiliations

Projects

MIDAS CENTER FOR COMMUNICABLE DISEASE DYNAMICS

National Institutes of Health, National Institute of General Medical Sciences
People: Laura White, Ted Cohen, William Hanage, Rene Niehus, Ben Cowling, Tyler Brown, Joseph Wu, Mauricio Santillana Guzman, Joseph Lewnard, Aimee Taylor, Ayesha Mahmud, Pablo Martinez de Salazar, Lerato Magosi, Edward Goldstein, Christine Tedijanto, Tigist Menkir, Sze Man Leung, Hsiao-Han Chang, Caroline Buckee, Pamela Martinez, Marc Lipsitch
2009 – 2020

Read More »

Papers

Chang MC, Kahn R, Li YA, Lee CS, Buckee CO, Chang HH. (2020). Variation in human mobility and its impact on the risk of future COVID-19 outbreaks in Taiwan. medRxiv : the preprint server for health sciences

Watson OJ, Okell LC, Hellewell J, Slater HC, Unwin HJT, Omedo I, Bejon P, Snow RW, Noor AM, Rockett K, Hubbart C, Nankabirwa JI, Greenhouse B, Chang HH, Ghani AC, Verity R. (2020). Evaluating the performance of malaria genetics for inferring changes in transmission intensity using transmission modelling. Molecular biology and evolution

Sinha I, Sayeed AA, Uddin D, Wesolowski A, Zaman SI, Faiz MA, Ghose A, Rahman MR, Islam A, Karim MJ, Saha A, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Chang HH, Miotto O, Kwiatkowski D, Dondorp AM, Day NPJ, Hossain MA, Buckee C, Maude RJ. (2020). Mapping the travel patterns of people with malaria in Bangladesh. BMC medicine, 18(1)

Lee RTC, Chang HH, Russell CA, Lipsitch M, Maurer-Stroh S. (2019). Influenza A Hemagglutinin Passage Bias Sites and Host Specificity Mutations. Cells, 8(9)

Chang HH, Wesolowski A, Sinha I, Jacob CG, Mahmud A, Uddin D, Zaman SI, Hossain MA, Faiz MA, Ghose A, Sayeed AA, Rahman MR, Islam A, Karim MJ, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Drury E, Gonçalves S, Kekre M, Dhorda M, Vongpromek R, Miotto O, Engø-Monsen K, Kwiatkowski D, Maude RJ, Buckee C. (2019). Mapping imported malaria in Bangladesh using parasite genetic and human mobility data. Elife, (8)

Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. (2018). Correction to: Mapping malaria by combining parasite genomic and epidemiologic data. BMC medicine, 16(1)

Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. (2018). Mapping malaria by combining parasite genomic and epidemiologic data. BMC medicine, 16(1)

Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B. (2017). THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS computational biology, 13(1)

Chang HH, Huber RG, Bond PJ, Grad YH, Camerini D, Maurer-Stroh S, Lipsitch M. (2017). Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses. Bulletin of the World Health Organization, 95(7)

Chang HH, Meibalan E, Zelin J, Daniels R, Eziefula AC, Meyer EC, Tadesse F, Grignard L, Joice RC, Drakeley C, Wirth DF, Volkman SK, Buckee C, Bousema T, Marti M. (2016). Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda. Scientific reports, (6)

Chang HH, Childs LM, Buckee CO. (2016). Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite. Scientific reports, (6)

Chang HH, Dordel J, Donker T, Worby CJ, Feil EJ, Hanage WP, Bentley SD, Huang SS, Lipsitch M. (2016). Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus. Genome medicine, 8(1)

Abel S, Abel zur Wiesch P, Chang HH, Davis BM, Lipsitch M, Waldor MK. (2015). Sequence tag-based analysis of microbial population dynamics. Nature methods, 12(3)

Chang HH, Cohen T, Grad YH, Hanage WP, O'Brien TF, Lipsitch M. (2015). Origin and proliferation of multiple-drug resistance in bacterial pathogens. Microbiology and molecular biology reviews : MMBR, 79(1)

Daniels RF, Schaffner SF, Wenger EA, Proctor JL, Chang HH, Wong W, Baro N, Ndiaye D, Fall FB, Ndiop M, Ba M, Milner DA Jr., Taylor TE, Neafsey DE, Volkman SK, Eckhoff PA, Hartl DL, Wirth DF. (2015). Modeling malaria genomics reveals transmission decline and rebound in Senegal. Proceedings of the National Academy of Sciences of the United States of America, 112(22)

Chang HH, Hartl DL. (2015). Recurrent bottlenecks in the malaria life cycle obscure signals of positive selection. Parasitology, (142 Suppl 1)

Worby CJ, Chang HH, Hanage WP, Lipsitch M. (2014). The distribution of pairwise genetic distances: a tool for investigating disease transmission. Genetics, 198(4)

Chang HH, Moss EL, Park DJ, Ndiaye D, Mboup S, Volkman SK, Sabeti PC, Wirth DF, Neafsey DE, Hartl DL. (2013). Malaria life cycle intensifies both natural selection and random genetic drift. Proceedings of the National Academy of Sciences of the United States of America, 110(50)

Lee YC, Chang HH. (2013). The evolution and functional significance of nested gene structures in Drosophila melanogaster. Genome biology and evolution, 5(10)

Chang HH, Park DJ, Galinsky KJ, Schaffner SF, Ndiaye D, Ndir O, Mboup S, Wiegand RC, Volkman SK, Sabeti PC, Wirth DF, Neafsey DE, Hartl DL. (2012). Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population. Molecular biology and evolution, 29(11)

If you’d like to update your profile, please email modifications to questions@midasnetwork.us.