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Joshua Herbeck

Assistant Professor

Education

Affiliations

Projects

Papers

Reid MC, Peebles K, Stansfield SE, Goodreau SM, Abernethy N, Gottlieb GS, Mittler JE, Herbeck JT. (2019). Models to predict the public health impact of vaccine resistance: A systematic review. Vaccine, 37(35)

Gräf T, Herbeck JT. (2019). Genetic clusters and transmission in transgender women. The lancet. HIV, 6(3)

Herbeck JT, Peebles K, Edlefsen PT, Rolland M, Murphy JT, Gottlieb GS, Abernethy N, Mullins JI, Mittler JE, Goodreau SM. (2018). HIV population-level adaptation can rapidly diminish the impact of a partially effective vaccine. Vaccine, 36(4)

Herbeck JT, Kerani RP, Poon AFY. (2018). What Proportion of HIV-Infected Foreign-Born Individuals in the United States Have Been Infected After Immigrating to the United States?. Journal of acquired immune deficiency syndromes (1999), 77(4)

Vandormael A, de Oliveira T, Tanser F, Bärnighausen T, Herbeck JT. (2018). High percentage of undiagnosed HIV cases within a hyperendemic South African community: a population-based study. Journal of epidemiology and community health, 72(2)

Herbeck JT, Mittler JE, Gottlieb GS, Goodreau SM, Murphy JT, Cori A, Pickles M, Fraser C. (2016). Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study. Virus evolution, 2(2)

Herbeck J, Tanser F. (2016). Community viral load as an index of HIV transmission potential. The lancet. HIV, 3(4)

Herbeck J, Ghorai S, Chen L, Rinaldo CR, Margolick JB, Detels R, Jacobson L, Wolinsky S, Mullins JI. (2015). p21(WAF1/CIP1) RNA expression in highly HIV-1 exposed, uninfected individuals. PLoS One, 10(3)

Herbeck J, Celum C. (2014). The changing virulence of HIV. The lancet. HIV, 1(3)

Herbeck JT, Mittler JE, Gottlieb GS, Mullins JI. (2014). An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load. PLoS computational biology, 10(6)

Herbeck JT, Müller V, Maust BS, Ledergerber B, Torti C, Di Giambenedetto S, Gras L, Günthard HF, Jacobson LP, Mullins JI, Gottlieb GS. (2012). Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS (London, England), 26(2)

Herbeck JT, Rolland M, Liu Y, McLaughlin S, McNevin J, Zhao H, Wong K, Stoddard JN, Raugi D, Sorensen S, Genowati I, Birditt B, McKay A, Diem K, Maust BS, Deng W, Collier AC, Stekler JD, McElrath MJ, Mullins JI. (2011). Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes. Journal of virology, 85(15)

Müller V, Fraser C, Herbeck JT. (2011). A strong case for viral genetic factors in HIV virulence. Viruses, 3(3)

Herbeck JT, Gottlieb GS, Winkler CA, Nelson GW, An P, Maust BS, Wong KG, Troyer JL, Goedert JJ, Kessing BD, Detels R, Wolinsky SM, Martinson J, Buchbinder S, Kirk GD, Jacobson LP, Margolick JB, Kaslow RA, O'Brien SJ, Mullins JI. (2010). Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. The Journal of infectious diseases, 201(4)

Herbeck JT, Gottlieb GS, Wong K, Detels R, Phair JP, Rinaldo CR, Jacobson LP, Margolick JB, Mullins JI. (2009). Fidelity of SNP array genotyping using Epstein Barr virus-transformed B-lymphocyte cell lines: implications for genome-wide association studies. PLoS One, 4(9)

Herbeck JT, Gottlieb GS, Li X, Hu Z, Detels R, Phair J, Rinaldo C, Jacobson LP, Margolick JB, Mullins JI. (2008). Lack of evidence for changing virulence of HIV-1 in North America. PLoS One, 3(2)

Herbeck JT, Lyagoba F, Moore SW, Shindo N, Biryahwaho B, Kaleebu P, Mullins JI. (2007). Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda. AIDS research and human retroviruses, 23(5)

Herbeck JT, Nickle DC, Learn GH, Gottlieb GS, Curlin ME, Heath L, Mullins JI. (2006). Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host. Journal of virology, 80(4)

Herbeck JT, Degnan PH, Wernegreen JJ. (2005). Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (gamma-Proteobacteria). Molecular biology and evolution, 22(3)

Herbeck JT, Wall DP. (2005). Converging on a general model of protein evolution. Trends in biotechnology, 23(10)

Herbeck JT, Wall DP, Wernegreen JJ. (2003). Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia. Microbiology (Reading, England), 149(Pt 9)

Wall DP, Herbeck JT. (2003). Evolutionary patterns of codon usage in the chloroplast gene rbcL. Journal of molecular evolution, 56(6)

Herbeck JT, Novembre J. (2003). Codon usage patterns in cytochrome oxidase I across multiple insect orders. Journal of molecular evolution, 56(6)

Herbeck JT, Funk DJ, Degnan PH, Wernegreen JJ. (2003). A conservative test of genetic drift in the endosymbiotic bacterium Buchnera: slightly deleterious mutations in the chaperonin groEL. Genetics, 165(4)