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Fonseca LL, Laubenbacher RC, Böttcher L. (2026). Learning dynamical systems with biochemically informed neural ordinary differential equations. bioRxiv : the preprint server for biology
Pagani L, León-Sampedro R, Amicone M, Tepekule B, Witzany C, Brugger SD, de Vos MGJ, Mitri S, Bakkeren E, Bottery MJ, Opatowski L, Leventhal GE, Faust K, Böttcher L, Lehtinen S, Kouyos RD, Bonhoeffer S. (2026). Modelling the role of the microbiome in antimicrobial resistance across scales. Nature microbiology, 11(7)
Owusu-Boaitey N, Böttcher L, Meyerowitz-Katz G, Howard J, Gorski DH, Besançon L, Barchuk A. (2026). Agreement between seroprevalence- and model-based estimates of COVID-19 burden. Global health action, 19(1)
Zhang J, Li X, Guo X, You Z, Böttcher L, Mogilner A, Hoffmann A, Chou T, Xia M. (2025). Reconstructing noisy gene regulation dynamics using extrinsic-noise-driven neural stochastic differential equations. PLoS computational biology, 21(9)
Wong T, Böttcher L, Chou T, D'Orsogna MR. (2025). Alcohol-induced deaths in the United States across age, race, gender, geography, and the COVID-19 pandemic. PLOS global public health, 5(9)
Fonseca LL, Böttcher L, Mehrad B, Laubenbacher RC. (2025). Optimal control of agent-based models via surrogate modeling. PLoS computational biology, 21(1)
Böttcher L, Fonseca LL, Laubenbacher RC. (2025). Control of medical digital twins with artificial neural networks. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 383(2292)
Böttcher L, D'Orsogna MR, Chou T. (2025). Aggregating multiple test results to improve medical decision-making. PLoS computational biology, 21(1)
Böttcher L, Felder S. (2025). Determining the Optimal Sequence of Multiple Tests. Statistics in medicine, 44(23-24)
Böttcher L, Porter MA. (2025). Clustering-induced localization of quantum walks on networks. Physical review. E, 112(6)
Fonseca LL, Böttcher L, Mehrad B, Laubenbacher RC. (2024). Surrogate modeling and control of medical digital twins. ArXiv
Owusu-Boaitey N, Böttcher L, He D, Erkhembayar R, Yang L, Kim DH, Barchuk A, Gorski DH, Howard J. (2024). Impact of cross-reactivity and herd immunity on SARS-CoV-2 pandemic severity. Infectious diseases (London, England)
Böttcher L, Chou T, D'Orsogna MR. (2024). Forecasting drug-overdose mortality by age in the United States at the national and county levels. PNAS nexus, 3(2)
Böttcher L, Porter MA. (2024). Complex networks with complex weights. Physical review. E, 109(2-1)
Masoomy H, Chou T, Böttcher L. (2023). Impact of random and targeted disruptions on information diffusion during outbreaks. Chaos (Woodbury, N.Y.), 33(3)
Böttcher L, Chou T, D'Orsogna MR. (2023). Modeling and forecasting age-specific drug overdose mortality in the United States. The European physical journal. Special topics
D'Orsogna MR, Böttcher L, Chou T. (2023). Fentanyl-driven acceleration of racial, gender and geographical disparities in drug overdose deaths in the United States. PLOS global public health, 3(3)
Böttcher L, Wald S, Chou T. (2023). Mathematical Characterization of Private and Public Immune Receptor Sequences. Bulletin of mathematical biology, 85(10)
Böttcher L, Breedvelt JJF, Warren FC, Segal Z, Kuyken W, Bockting CLH. (2023). Identifying relapse predictors in individual participant data with decision trees. BMC psychiatry, 23(1)
Schneider T, Dunbar ORA, Wu J, Böttcher L, Burov D, Garbuno-Inigo A, Wagner GL, Pei S, Daraio C, Ferrari R, Shaman J. (2022). Epidemic management and control through risk-dependent individual contact interventions. PLoS computational biology, 18(6)
Böttcher L, Gersbach H. (2022). A Refunding Scheme to Incentivize Narrow-Spectrum Antibiotic Development. Bulletin of mathematical biology, 84(6)
Böttcher L, Antulov-Fantulin N, Asikis T. (2022). AI Pontryagin or how artificial neural networks learn to control dynamical systems. Nature communications, 13(1)
Antulov-Fantulin N, Böttcher L. (2022). On the accuracy of short-term COVID-19 fatality forecasts. BMC infectious diseases, 22(1)
Böttcher L, D'Orsogna MR, Chou T. (2021). Using excess deaths and testing statistics to determine COVID-19 mortalities. European journal of epidemiology, 36(5)
Böttcher L, D'Orsogna MR, Chou T. (2021). A statistical model of COVID-19 testing in populations: effects of sampling bias and testing errors. medRxiv : the preprint server for health sciences
Böttcher L, D'Orsogna MR, Chou T. (2022). A statistical model of COVID-19 testing in populations: effects of sampling bias andtesting errors. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 380(2214)
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