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Maciej Boni

Associate Professor of Biology

Education

Affiliations

Projects

Papers

MacLean OA, Lytras S, Weaver S, Singer JB, Boni MF, Lemey P, Kosakovsky Pond SL, Robertson DL. (2021). Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen. PLoS biology, 19(3)

Thao TTN, de Bruin E, Phuong HT, Thao Vy NH, van den Ham HJ, Wills BA, Tien NTH, Le Duyen HT, Trung DT, Whitehead SS, Boni MF, Koopmans M, Clapham HE. (2020). Using NS1 flavivirus protein microarray to infer past infecting dengue virus serotype and number of past dengue virus infections in Vietnamese individuals. The Journal of Infectious Diseases

Bryant JE, Azman AS, Ferrari MJ, Arnold BF, Boni MF, Boum Y, Hayford K, Luquero FJ, Mina MJ, Rodriguez-Barraquer I, Wu JT, Wade D, Vernet G, Leung DT. (2020). Serology for SARS-CoV-2: Apprehensions, opportunities, and the path forward. Science immunology, 5(47)

Pollock DD, Castoe TA, Perry BW, Lytras S, Wade KJ, Robertson DL, Holmes EC, Boni MF, Kosakovsky Pond SL, Parry R, Carlton EJ, Wood JLN, Pennings PS, Goldstein RA. (2020). Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2. Molecular biology and evolution, 37(9)

Maciej F Boni, Philippe Lemey, Xiaowei Jiang, Tommy Tsan-Yuk Lam, Blair Perry, Todd Castoe, Andrew Rambaut, David L Robertson. (2020). Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic. bioRxiv

Alexis Delabouglise, Nguyen Thi Le Thanh, Huynh Thi Ai Xuyen, Benjamin Nguyen-Van-Yen, Phung Ngoc Tuyet, Ha Minh Lam, Maciej F Boni'. (2019). Poultry farmer response to disease outbreaks in smallholder farming systems. bioRxiv

Choisy M, Trinh ST, Nguyen TND, Nguyen TH, Mai QL, Pham QT, Tran ND, Dang DA, Horby PW, Boni MF, Bryant J, Lewycka SO, Nadjm B, Van Doorn HR, Wertheim HFL. (2019). Sero-Prevalence Surveillance to Predict Vaccine-Preventable Disease Outbreaks; A Lesson from the 2014 Measles Epidemic in Northern Vietnam. Open Forum Infectious Diseases, 6(3)

Lam HM, Phuong HT, Thao Vy NH, Le Thanh NT, Dung PN, Ngoc Muon TT, Van Vinh Chau N, Rodriguez-Barraquer I, Cummings DAT, Wills BA, Boni MF, Rabaa MA, Clapham HE. (2019). Serological inference of past primary and secondary dengue infection: implications for vaccination. Journal of the Royal Society, Interface, 16(156)

Delabouglise A, Nguyen-Van-Yen B, Thanh NTL, Xuyen HTA, Tuyet PN, Lam HM, Boni MF. (2019). Poultry population dynamics and mortality risks in smallholder farms of the Mekong river delta region. BMC Veterinary Research, 15(1)

Feachem RGA, Chen I, Akbari O, Bertozzi-Villa A, Bhatt S, Binka F, Boni MF, Buckee C, Dieleman J, Dondorp A, Eapen A, Sekhri Feachem N, Filler S, Gething P, Gosling R, Haakenstad A, Harvard K, Hatefi A, Jamison D, Jones KE, Karema C, Kamwi RN, Lal A, Larson E, Lees M, Lobo NF, Micah AE, Moonen B, Newby G, Ning X, Pate M, Quiñones M, Roh M, Rolfe B, Shanks D, Singh B, Staley K, Tulloch J, Wegbreit J, Woo HJ, Mpanju-Shumbusho W. (2019). Malaria eradication within a generation: ambitious, achievable, and necessary. Lancet, 394(10203)

Delabouglise A, Boni MF. (2020). Game theory of vaccination and depopulation for managing livestock diseases and zoonoses on small-scale farms. Epidemics, (30)

Richard D Pearson, Roberto Amato, Dominic P Kwiatkowski, MalariaGEN Plasmodium falciparum Community Project. (2019). An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples. bioRxiv

Saumyadipta Pyne, Mohammad Hasnat Ali, Meghana Aruru, HarshaL Rao. (2018). Quantification of retinal nerve fiber layer changes in optical coherence tomography images reveals differential progression of glaucomas. University Journal of Health Sciences

Saumyadipta Pyne, Meghana Aruru. (2018). Antifungal resistance: Implications for data policy and research. University Journal of Health Sciences

Vinh DN, Ha DTM, Hanh NT, Thwaites G, Boni MF, Clapham HE, Thuong NTT. (2018). Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015. BMC Infectious Diseases, 18(1)

Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF. (2018). Nonannual seasonality of influenza-like illness in a tropical urban setting. Influenza and other respiratory viruses, 12(6)

Khodayari Moez E, Pyne S, Dinu I. (2018). Association between bivariate expression of key oncogenes and metabolic phenotypes of patients with prostate cancer. Computers in Biology and Medicine, (103)

Thanh LT, Phan TH, Rattanavong S, Nguyen TM, Duong AV, Dacon C, Hoang TN, Nguyen LPH, Tran CTH, Davong V, Nguyen CVV, Thwaites GE, Boni MF, Dance D, Ashton PM, Day JN. (2018). Multilocus sequence typing of Cryptococcus neoformans var. grubii from Laos in a regional and global context. Medical Mycology, 57(5)

Hung TM, Clapham HE, Bettis AA, Cuong HQ, Thwaites GE, Wills BA, Boni MF, Turner HC. (2018). The estimates of the health and economic burden of dengue in Vietnam. Trends in Parasitology, 34(10)

Goldlust SM, Thuan PD, Giang DDH, Thang ND, Thwaites GE, Farrar J, Thanh NV, Nguyen TD, Grenfell BT, Boni MF, Hien TT. (2018). The decline of malaria in Vietnam, 1991-2014. Malaria Journal, 17(1)

Meghana Aruru, Saumyadipta Pyne. (2017). Noncommunicable disease modeling and simulation as means of understanding childhood obesity and intervention effectiveness. University Journal of Health Sciences, (3)

Tun STT, von Seidlein L, Pongvongsa T, Mayxay M, Saralamba S, Kyaw SS, Chanthavilay P, Celhay O, Nguyen TD, Tran TN, Parker DM, Boni MF, Dondorp AM, White LJ. (2017). Towards malaria elimination in Savannakhet, Lao PDR: mathematical modelling driven strategy design. Malaria journal, 16(1)

Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF. (2015). Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010. The American journal of tropical medicine and hygiene, 92(4)

Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO. (2015). Impact of human mobility on the emergence of dengue epidemics in Pakistan. Proceedings of the National Academy of Sciences of the United States of America, 112(38)

Boni MF, Galvani AP, Wickelgren AL, Malani A. (2013). Economic epidemiology of avian influenza on smallholder poultry farms. Theoretical population biology, (90)

Rasmussen DA, Boni MF, Koelle K. (2014). Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam. Molecular biology and evolution, 31(2)

Beatty M, Boni MF, Brown S, Buathong R, Burke D, Coudeville L, Cummings DA, Edelman R, Farrar J, Focks DA, Gomes MG, Guignard A, Halstead S, Hombach J, Knerer G, Koelle K, Lam FC, Lang J, Longini I, Medlock J, Namgyal P, Powell M, Recker M, Rohani P, Standaert B, Struchiner C, Teyssou R, Wearing H. (2012). Assessing the potential of a candidate dengue vaccine with mathematical modeling. PLoS neglected tropical diseases, 6(3)

Chanaki Amaratunga, Mehul Dhorda, Rob Van Der Pluijm, Joel Tarning, Ricardo Aguas, Maciej F Boni, Phaik Yeong Cheah, Paulina Tindana, Freek De Haan, Wouter Boon, Ellen H Moors, Katherine Plewes, Rupam Tripura, Nick P Day, Nick J White, Arjen M Dondorp. (2009). Triple artemisinin combination therapies: A new paradigm for the treatment of ma. American Journal of Tropical Medicine and Hygiene, 101(5)

Pongtavornpinyo W, Hastings IM, Dondorp A, White LJ, Maude RJ, Saralamba S, Day NP, White NJ, Boni MF. (2009). Probability of emergence of antimalarial resistance in different stages of the parasite life cycle. Evolutionary applications, 2(1)

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