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Rebecca Stumpf

Professor

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Papers

Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR. (2019). Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints. mSphere, 4(4)

Pafčo B, Sharma AK, Petrželková KJ, Vlčková K, Todd A, Yeoman CJ, Wilson BA, Stumpf R, White BA, Nelson KE, Leigh S, Gomez A. (2019). Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors. American journal of physical anthropology, 169(3)

Mann AE, Mazel F, Lemay MA, Morien E, Billy V, Kowalewski M, Di Fiore A, Link A, Goldberg TL, Tecot S, Baden AL, Gomez A, Sauther ML, Cuozzo FP, Rice GAO, Dominy NJ, Stumpf R, Lewis RJ, Swedell L, Amato K, Wegener Parfrey L. (2020). Biodiversity of protists and nematodes in the wild nonhuman primate gut. The ISME journal, 14(2)

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE. (2019). Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nature microbiology, 4(10)

Amato KR, Mallott EK, McDonald D, Dominy NJ, Goldberg T, Lambert JE, Swedell L, Metcalf JL, Gomez A, Britton GAO, Stumpf RM, Leigh SR, Knight R. (2019). Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny. Genome biology, 20(1)

Donohue ME, Asangba AE, Ralainirina J, Weisrock DW, Stumpf RM, Wright PC. (2019). Extensive variability in the gut microbiome of a highly-specialized and critically endangered lemur species across sites. American journal of primatology, 81(10-11)

Asangba AE, Donohue ME, Lamb A, Wright PC, Halajian A, Leigh SR, Stumpf RM. (2019). Variations in the microbiome due to storage preservatives are not large enough to obscure variations due to factors such as host population, host species, body site, and captivity. American journal of primatology, 81(10-11)

Amato KR, Stumpf RM. (2019). Moving forward with the primate microbiome: Introduction to a special issue of the American Journal of Primatology. American journal of primatology, 81(10-11)

Vlčková K, Pafčo B, Petrželková KJ, Modrý D, Todd A, Yeoman CJ, Torralba M, Wilson BA, Stumpf RM, White BA, Nelson KE, Leigh SR, Gomez A. (2018). Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas. Frontiers in microbiology, (9)

Clayton JB, Gomez A, Amato K, Knights D, Travis DA, Blekhman R, Knight R, Leigh S, Stumpf R, Wolf T, Glander KE, Cabana F, Johnson TJ. (2018). The gut microbiome of nonhuman primates: Lessons in ecology and evolution. American journal of primatology, 80(6)

Amato KR, Van Belle S, Di Fiore A, Estrada A, Stumpf R, White B, Nelson KE, Knight R, Leigh SR. (2017). Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate. Microbial ecology, 74(1)

Rushmore J, Allison AB, Edwards EE, Bagal U, Altizer S, Cranfield MR, Glenn TC, Liu H, Mudakikwa A, Mugisha L, Muller MN, Stumpf RM, Thompson ME, Wrangham R, Yabsley MJ. (2017). Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections. American journal of primatology, 79(4)

Raulo A, Ruokolainen L, Lane A, Amato K, Knight R, Leigh S, Stumpf R, White B, Nelson KE, Baden AL, Tecot SR. (2018). Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality. The Journal of animal ecology, 87(2)

Vlčková K, Shutt-Phillips K, Heistermann M, Pafčo B, Petrželková KJ, Todd A, Modrý D, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Gomez A. (2018). Impact of stress on the gut microbiome of free-ranging western lowland gorillas. Microbiology (Reading, England), 164(1)

Vlčková K, Gomez A, Petrželková KJ, Whittier CA, Todd AF, Yeoman CJ, Nelson KE, Wilson BA, Stumpf RM, Modrý D, White BA, Leigh SR. (2016). Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla). Microbial ecology, 72(4)

Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR. (2016). Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp. The ISME journal, 10(2)

Bennett G, Malone M, Sauther ML, Cuozzo FP, White B, Nelson KE, Stumpf RM, Knight R, Leigh SR, Amato KR. (2016). Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta). American journal of primatology, 78(8)

Polk JD, Stumpf RM, Rosengren KS. (2017). Limb dominance, foot orientation and functional asymmetry during walking gait. Gait & posture, (52)

Gomez A, Petrzelkova KJ, Burns MB, Yeoman CJ, Amato KR, Vlckova K, Modry D, Todd A, Jost Robinson CA, Remis MJ, Torralba MG, Morton E, Umaña JD, Carbonero F, Gaskins HR, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Blekhman R. (2016). Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns. Cell reports, 14(9)

Rushmore J, Allison AB, Edwards EE, Bagal U, Altizer S, Cranfield MR, Glenn TC, Liu H, Mudakikwa A, Mugisha L, Muller MN, Stumpf RM, Thompson ME, Wrangham R, Yabsley MJ. (2015). Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections. American journal of primatology, 77(10)

Amato KR, Martinez-Mota R, Righini N, Raguet-Schofield M, Corcione FP, Marini E, Humphrey G, Gogul G, Gaffney J, Lovelace E, Williams L, Luong A, Dominguez-Bello MG, Stumpf RM, White B, Nelson KE, Knight R, Leigh SR. (2016). Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species. Oecologia, 180(3)

Amato KR, Yeoman CJ, Cerda G, Schmitt CA, Cramer JD, Miller ME, Gomez A, Turner TR, Wilson BA, Stumpf RM, Nelson KE, White BA, Knight R, Leigh SR. (2015). Variable responses of human and non-human primate gut microbiomes to a Western diet. Microbiome, (3)

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson KE, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR. (2015). Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology. Molecular ecology, 24(10)

Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR. (2016). Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp. The ISME journal, 10(2)

Rushmore J, Caillaud D, Hall RJ, Stumpf RM, Meyers LA, Altizer S. (2014). Network-based vaccination improves prospects for disease control in wild chimpanzees. Journal of the Royal Society, Interface, 11(97)

Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA. (2014). The role of gut microbes in satisfying the nutritional demands of adult and juvenile wild, black howler monkeys (Alouatta pigra). American journal of physical anthropology, 155(4)

Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA. (2015). The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra). Microbial ecology, 69(2)

Yildirim S, Yeoman CJ, Janga SC, Thomas SM, Ho M, Leigh SR, , White BA, Wilson BA, Stumpf RM. (2014). Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance. The ISME journal, 8(12)

Milich KM, Stumpf RM, Chambers JM, Chapman CA. (2014). Female red colobus monkeys maintain their densities through flexible feeding strategies in logged forests in Kibale National Park, Uganda. American journal of physical anthropology, 154(1)

Stumpf RM, Wilson BA, Rivera A, Yildirim S, Yeoman CJ, Polk JD, White BA, Leigh SR. (2013). The primate vaginal microbiome: comparative context and implications for human health and disease. American journal of physical anthropology, (152 Suppl 57)

Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA, Leigh SR. (2013). Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes. The ISME journal, 7(7)

Rushmore J, Caillaud D, Matamba L, Stumpf RM, Borgatti SP, Altizer S. (2013). Social network analysis of wild chimpanzees provides insights for predicting infectious disease risk. The Journal of animal ecology, 82(5)

Yeoman CJ, Thomas SM, Miller ME, Ulanov AV, Torralba M, Lucas S, Gillis M, Cregger M, Gomez A, Ho M, Leigh SR, Stumpf R, Creedon DJ, Smith MA, Weisbaum JS, Nelson KE, Wilson BA, White BA. (2013). A multi-omic systems-based approach reveals metabolic markers of bacterial vaginosis and insight into the disease. PloS one, 8(2)

Stumpf RM, Martinez-Mota R, Milich KM, Righini N, Shattuck MR. Sexual conflict in primates. Evolutionary anthropology, 20(2)

Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton G, Buhay CJ, Ding Y, Dugan-Rocha SP, Muzny DM, Qin X, Gibbs RA, Leigh SR, Stumpf R, White BA, Highlander SK, Nelson KE, Wilson BA. (2010). Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential. PloS one, 5(8)

Rivera AJ, Stumpf RM, Wilson B, Leigh S, Salyers AA. (2010). Baboon vaginal microbiota: an overlooked aspect of primate physiology. American journal of primatology, 72(6)

Rivera AJ, Frank JA, Stumpf R, Salyers AA, Wilson BA, Olsen GJ, Leigh S. (2011). Differences between the normal vaginal bacterial community of baboons and that of humans. American journal of primatology, 73(2)

Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE. (2010). Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities. PloS one, 5(11)

Jeters RT, Rivera AJ, Boucek LM, Stumpf RM, Leigh SR, Salyers AA. (2009). Antibiotic resistance genes in the vaginal microbiota of primates not normally exposed to antibiotics. Microbial drug resistance (Larchmont, N.Y.), 15(4)

Kim TK, Thomas SM, Ho M, Sharma S, Reich CI, Frank JA, Yeater KM, Biggs DR, Nakamura N, Stumpf R, Leigh SR, Tapping RI, Blanke SR, Slauch JM, Gaskins HR, Weisbaum JS, Olsen GJ, Hoyer LL, Wilson BA. (2009). Heterogeneity of vaginal microbial communities within individuals. Journal of clinical microbiology, 47(4)

Knott CD, Emery Thompson M, Stumpf RM, McIntyre MH. (2010). Female reproductive strategies in orangutans, evidence for female choice and counterstrategies to infanticide in a species with frequent sexual coercion. Proceedings. Biological sciences, 277(1678)

Wyner YM, Johnson SE, Stumpf RM, Desalle R. (2002). Genetic assessment of a white-collared x red-fronted lemur hybrid zone at Andringitra, Madagascar. American journal of primatology, 57(2)