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Samuel Scarpino

Assistant Professor

Education

Affiliations

Projects

Papers

Rader B, White LF, Burns MR, Chen J, Brilliant J, Cohen J, Shaman J, Brilliant L, Hawkins JB, Scarpino SV, Astley CM, Brownstein JS. (2020). Mask Wearing and Control of SARS-CoV-2 Transmission in the United States. medRxiv : the preprint server for health sciences

Kraemer MUG, Yang CH, Gutierrez B, Wu CH, Klein B, Pigott DM, , du Plessis L, Faria NR, Li R, Hanage WP, Brownstein JS, Layan M, Vespignani A, Tian H, Dye C, Pybus OG, Scarpino SV. (2020). The effect of human mobility and control measures on the COVID-19 epidemic in China. Science (New York, N.Y.)

Xu B, Gutierrez B, Mekaru S, Sewalk K, Goodwin L, Loskill A, Cohn EL, Hswen Y, Hill SC, Cobo MM, Zarebski AE, Li S, Wu CH, Hulland E, Morgan JD, Wang L, O'Brien K, Scarpino SV, Brownstein JS, Pybus OG, Pigott DM, Kraemer MUG. (2020). Epidemiological data from the COVID-19 outbreak, real-time case information. Scientific data, 7(1)

Buckee CO, Balsari S, Chan J, Crosas M, Dominici F, Gasser U, Grad YH, Grenfell B, Halloran ME, Kraemer MUG, Lipsitch M, Metcalf CJE, Meyers LA, Perkins TA, Santillana M, Scarpino SV, Viboud C, Wesolowski A, Schroeder A. (2020). Aggregated mobility data could help fight COVID-19. Science (New York, N.Y.)

Poletto C, Scarpino SV, Volz EM. (2020). Applications of predictive modelling early in the COVID-19 epidemic. The Lancet. Digital health

Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. (2020). Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America

Kraemer MUG, Yang CH, Gutierrez B, Wu CH, Klein B, Pigott DM, , du Plessis L, Faria NR, Li R, Hanage WP, Brownstein JS, Layan M, Vespignani A, Tian H, Dye C, Cauchemez S, Pybus OG, Scarpino SV. (2020). The effect of human mobility and control measures on the COVID-19 epidemic in China. medRxiv : the preprint server for health sciences

Rader B, Scarpino SV, Nande A, Hill AL, Adlam B, Reiner RC, Pigott DM, Gutierrez B, Zarebski AE, Shrestha M, Brownstein JS, Castro MC, Dye C, Tian H, Pybus OG, Kraemer MUG. (2020). Crowding and the shape of COVID-19 epidemics. Nature medicine

Kraemer Moritz U.G., Yang Chia-Hung, Gutierrez Bernardo, Wu Chieh-Hsi, Klein Brennan, Pigott David M., group open COVID-19 data working, Plessis Louis du, Faria Nuno R, Li Ruoran, Hanage William P., Brownstein John S, Layan Maylis, Vespignani Alessandro, Tian Huaiyu, Dye Christopher, Cauchemez Simon, Pybus Oliver, Scarpino Samuel V. (2020). The effect of human mobility and control measures on the COVID-19 epidemic in China. Cold Spring Harbor Laboratory Press

Scarpino SV, Scott JG, Eggo RM, Clements B, Dimitrov NB, Meyers LA. (2020). Socioeconomic bias in influenza surveillance. PLoS computational biology, 16(7)

Oliver N, Lepri B, Sterly H, Lambiotte R, Deletaille S, De Nadai M, Letouzé E, Salah AA, Benjamins R, Cattuto C, Colizza V, de Cordes N, Fraiberger SP, Koebe T, Lehmann S, Murillo J, Pentland A, Pham PN, Pivetta F, Saramäki J, Scarpino SV, Tizzoni M, Verhulst S, Vinck P. (2020). Mobile phone data for informing public health actions across the COVID-19 pandemic life cycle. Science advances, 6(23)

Hébert-Dufresne L, Althouse BM, Scarpino SV, Allard A. (2020). Beyond R0: heterogeneity in secondary infections and probabilistic epidemic forecasting. Journal of the Royal Society, Interface, 17(172)

Hébert-Dufresne Laurent, Althouse Benjamin M, Scarpino Samuel V, Allard Antoine. (2020). Beyond $R_0$: the importance of contact tracing when predicting epidemics

Craig R, Kunkel E, Crowcroft NS, Fitzpatrick MC, de Melker H, Althouse BM, Merkel T, Scarpino SV, Koelle K, Friedman L, Arnold C, Bolotin S. (2020). Asymptomatic Infection and Transmission of Pertussis in Households: A Systematic Review. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 70(1)

Rivers CM, Scarpino SV. (2018). Modelling the trajectory of disease outbreaks works. Nature, 559(7715)

Scarpino SV, Meyers LA, Johansson MA. (2017). Design Strategies for Efficient Arbovirus Surveillance. Emerging infectious diseases, 23(4)

DeAngelis H, Scarpino SV, Fitzpatrick MC, Galvani AP, Althouse BM. (2016). Epidemiological and Economic Effects of Priming With the Whole-Cell Bordetella pertussis Vaccine. JAMA pediatrics, 170(5)

Fitzpatrick MC, Wenzel NS, Scarpino SV, Althouse BM, Atkins KE, Galvani AP, Townsend JP. (2016). Cost-effectiveness of next-generation vaccines: The case of pertussis. Vaccine, 34(29)

Althouse BM, Scarpino SV, Meyers LA, Ayers JW, Bargsten M, Baumbach J, Brownstein JS, Castro L, Clapham H, Cummings DA, Del Valle S, Eubank S, Fairchild G, Finelli L, Generous N, George D, Harper DR, Hébert-Dufresne L, Johansson MA, Konty K, Lipsitch M, Milinovich G, Miller JD, Nsoesie EO, Olson DR, Paul M, Polgreen PM, Priedhorsky R, Read JM, Rodriguez-Barraquer I, Smith DJ, Stefansen C, Swerdlow DL, Thompson D, Vespignani A, Wesolowski A. (2015). Enhancing disease surveillance with novel data streams: challenges and opportunities. EPJ data science, (4)

Halloran ME, Vespignani A, Bharti N, Feldstein LR, Alexander KA, Ferrari M, Shaman J, Drake JM, Porco T, Eisenberg JN, Del Valle SY, Lofgren E, Scarpino SV, Eisenberg MC, Gao D, Hyman JM, Eubank S, Longini IM Jr.. (2014). Ebola: mobility data. Science (New York, N.Y.), 346(6208)

Scarpino SV, Iamarino A, Wells C, Yamin D, Ndeffo-Mbah M, Wenzel NS, Fox SJ, Nyenswah T, Altice FL, Galvani AP, Meyers LA, Townsend JP. (2015). Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 60(7)

Scarpino SV, Levin DA, Meyers LA. (2014). Polyploid formation shapes flowering plant diversity. The American naturalist, 184(4)

Lofgren ET, Halloran ME, Rivers CM, Drake JM, Porco TC, Lewis B, Yang W, Vespignani A, Shaman J, Eisenberg JN, Eisenberg MC, Marathe M, Scarpino SV, Alexander KA, Meza R, Ferrari MJ, Hyman JM, Meyers LA, Eubank S. (2014). Opinion: Mathematical models: a key tool for outbreak response. Proceedings of the National Academy of Sciences of the United States of America, 111(51)

Scarpino SV, Dimitrov NB, Meyers LA. (2012). Optimizing provider recruitment for influenza surveillance networks. PLoS computational biology, 8(4)

Caillaud D, Crofoot MC, Scarpino SV, Jansen PA, Garzon-Lopez CX, Winkelhagen AJ, Bohlman SA, Walsh PD. (2010). Modeling the spatial distribution and fruiting pattern of a key tree species in a neotropical forest: methodology and potential applications. PloS one, 5(11)

Pourbohloul B, Ahued A, Davoudi B, Meza R, Meyers LA, Skowronski DM, Villaseñor I, Galván F, Cravioto P, Earn DJ, Dushoff J, Fisman D, Edmunds WJ, Hupert N, Scarpino SV, Trujillo J, Lutzow M, Morales J, Contreras A, Chávez C, Patrick DM, Brunham RC. (2009). Initial human transmission dynamics of the pandemic (H1N1) 2009 virus in North America. Influenza and other respiratory viruses, 3(5)

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