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Sarah Cobey

Associate Professor

Education

Affiliations

Projects

Papers

Cobey S. (2020). Modeling infectious disease dynamics. Science (New York, N.Y.)

Henry C, Zheng NY, Huang M, Cabanov A, Rojas KT, Kaur K, Andrews SF, Palm AE, Chen YQ, Li Y, Hoskova K, Utset HA, Vieira MC, Wrammert J, Ahmed R, Holden-Wiltse J, Topham DJ, Treanor JJ, Ertl HC, Schmader KE, Cobey S, Krammer F, Hensley SE, Greenberg H, He XS, Wilson PC. (2019). Influenza Virus Vaccination Elicits Poorly Adapted B Cell Responses in Elderly Individuals. Cell host & microbe, 25(3)

Ranjeva S, Subramanian R, Fang VJ, Leung GM, Ip DKM, Perera RAPM, Peiris JSM, Cowling BJ, Cobey S. (2019). Age-specific differences in the dynamics of protective immunity to influenza. Nature communications, 10(1), https://github.com/cobeylab/Influenza-immune-dynamics/tree/master/Data

Gouma S, Zost SJ, Parkhouse K, Branche A, Topham DJ, Cobey S, Hensley SE. (2019). Comparison of human H3N2 antibody responses elicited by egg-based, cell-based, and recombinant protein-based influenza vaccines during the 2017-2018 season. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

Wilson PC, Cobey S. (2018). Characterization of the immunologic repertoire: A quick start guide. Immunological reviews, 284(1)

Vieira MC, Zinder D, Cobey S. (2018). Selection and Neutral Mutations Drive Pervasive Mutability Losses in Long-Lived Anti-HIV B-Cell Lineages. Molecular Biology and Evolution, 35(5)

Cobey S, Grad YH. (2018). Response to Skowronski and De Serres. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 67(9)

Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, Hensley SE, Grad YH. (2018). Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012-2013. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 67(3)

Lewnard JA, Cobey S. (2018). Immune History and Influenza Vaccine Effectiveness. Vaccines, 6(2)

Wen FT, Bell SM, Bedford T, Cobey S. (2018). Estimating Vaccine-Driven Selection in Seasonal Influenza. Viruses, 10(9), https://github.com/cobeylab/flu-vaccine-sieve

Cobey S. (2018). Repeated Vaccination May Protect Children From Influenza Infection. JAMA network open, 1(6)

Cai FY, Fussell T, Cobey S, Lipsitch M. (2018). Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine. PLoS computational biology, 14(10)

Baskerville EB, Cobey S. (2017). Does influenza drive absolute humidity?. Proceedings of the National Academy of Sciences of the United States of America, 114(12)

Cobey S, Hensley SE. (2017). Immune history and influenza virus susceptibility. Current Opinion in Virology, (22)

Zost SJ, Parkhouse K, Gumina ME, Kim K, Diaz Perez S, Wilson PC, Treanor JJ, Sant AJ, Cobey S, Hensley SE. (2017). Contemporary H3N2 influenza viruses have a glycosylation site that alters binding of antibodies elicited by egg-adapted vaccine strains. Proceedings of the National Academy of Sciences of the United States of America, 114(47)

Ranjeva SL, Baskerville EB, Dukic V, Villa LL, Lazcano-Ponce E, Giuliano AR, Dwyer G, Cobey S. (2017). Recurring infection with ecologically distinct HPV types can explain high prevalence and diversity. Proceedings of the National Academy of Sciences of the United States of America, 114(51), https://github.com/cobeylab/HPV-model

Cobey S. (2017). Sick if you do, sick if you don't. Nature Ecology & Evolution, 1(11)

Cobey S, Baskerville EB, Colijn C, Hanage W, Fraser C, Lipsitch M. (2017). Host population structure and treatment frequency maintain balancing selection on drug resistance. Journal of the Royal Society, Interface, 14(133)

Wen F, Bedford T, Cobey S. (2016). Explaining the geographical origins of seasonal influenza A (H3N2). Proceedings. Biological sciences, 283(1838)

Lipsitch M, Barclay W, Raman R, Russell CJ, Belser JA, Cobey S, Kasson PM, Lloyd-Smith JO, Maurer-Stroh S, Riley S, Beauchemin CA, Bedford T, Friedrich TC, Handel A, Herfst S, Murcia PR, Roche B, Wilke CO, Russell CA. (2016). Viral factors in influenza pandemic risk assessment. Elife, (5)

Childs LM, Baskerville EB, Cobey S. (2015). Trade-offs in antibody repertoires to complex antigens. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 370(1676)

Cobey S, Wilson P, Matsen FA 4th.. (2015). The evolution within us. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 370(1676)

Perron GG, Inglis RF, Pennings PS, Cobey S. (2015). Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health. Evolutionary Applications, 8(3)

Cobey S. (2014). Pathogen evolution and the immunological niche. Annals of the New York Academy of Sciences, 1320(1)

Cobey S, Lipsitch M. (2013). Pathogen diversity and hidden regimes of apparent competition. The American naturalist, 181(1)

Cobey S, Lipsitch M. (2012). Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes. Science (New York, N.Y.), 335(6074)

Bedford T, Cobey S, Pascual M. (2011). Strength and tempo of selection revealed in viral gene genealogies. BMC evolutionary biology, (11)

Goldstein E, Cobey S, Takahashi S, Miller JC, Lipsitch M. (2011). Predicting the epidemic sizes of influenza A/H1N1, A/H3N2, and B: a statistical method. PLoS medicine, 8(7)

Bedford T, Cobey S, Beerli P, Pascual M. (2010). Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). PLoS pathogens, 6(5)

Cobey S, Pascual M. (2011). Consequences of host heterogeneity, epitope immunodominance, and immune breadth for strain competition. Journal of theoretical biology, 270(1)

Cobey S, Pascual M, Dieckmann U. (2010). Ecological factors driving the long-term evolution of influenza's host range. Proceedings. Biological sciences, 277(1695)

Cobey S, Baskerville EB. (2010). Limits to Causal Inference with State-Space Reconstruction for Infectious Disease. PloS one, 11(12)

Cobey S, Koelle K. (2008). Capturing escape in infectious disease dynamics. Trends in ecology & evolution, 23(10)

Koelle K, Cobey S, Grenfell B, Pascual M. (2006). Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans. Science (New York, N.Y.), 314(5807)