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Sebastian Funk

Associate Professor

Education

Affiliations

Projects

Papers

Jombart T, van Zandvoort K, Russell TW, Jarvis CI, Gimma A, Abbott S, Clifford S, Funk S, Gibbs H, Liu Y, Pearson CAB, Bosse NI, , Eggo RM, Kucharski AJ, Edmunds WJ. (2020). Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research, (5)

Emery JC, Russell TW, Liu Y, Hellewell J, Pearson CA, , Knight GM, Eggo RM, Kucharski AJ, Funk S, Flasche S, Houben RMGJ. (2020). The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship. eLife, (9)

Musa S, Bach Habersaat K, Jackson C, Kulo A, Primorac E, Smjecanin M, Funk S. (2020). Tailoring Immunization Programmes: using patient file data to explore vaccination uptake and associated factors. Human vaccines & immunotherapeutics

Gostic KM, McGough L, Baskerville E, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday J, Bosse N, Sherratt K, Thompson RM, White LF, Huisman J, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. (2020). Practical considerations for measuring the effective reproductive number, Rt. medRxiv : the preprint server for health sciences

Abbas K, Procter SR, van Zandvoort K, Clark A, Funk S, Mengistu T, Hogan D, Dansereau E, Jit M, Flasche S,. (2020). Routine childhood immunisation during the COVID-19 pandemic in Africa: a benefit-risk analysis of health benefits versus excess risk of SARS-CoV-2 infection. The Lancet. Global health

Willem L, Van Hoang T, Funk S, Coletti P, Beutels P, Hens N. (2020). SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19. BMC research notes, 13(1)

Métras R, Edmunds WJ, Youssouffi C, Dommergues L, Fournié G, Camacho A, Funk S, Cardinale E, Le Godais G, Combo S, Filleul L, Youssouf H, Subiros M. (2020). Estimation of Rift Valley fever virus spillover to humans during the Mayotte 2018-2019 epidemic. Proceedings of the National Academy of Sciences of the United States of America

Jombart T, van Zandvoort K, Russell TW, Jarvis CI, Gimma A, Abbott S, Clifford S, Funk S, Gibbs H, Liu Y, Pearson CAB, Bosse NI, , Eggo RM, Kucharski AJ, Edmunds WJ. (2020). Inferring the number of COVID-19 cases from recently reported deaths. medRxiv : the preprint server for health sciences

Thompson RN, Hollingsworth TD, Isham V, Arribas-Bel D, Ashby B, Britton T, Challenor P, Chappell LHK, Clapham H, Cunniffe NJ, Dawid AP, Donnelly CA, Eggo RM, Funk S, Gilbert N, Glendinning P, Gog JR, Hart WS, Heesterbeek H, House T, Keeling M, Kiss IZ, Kretzschmar ME, Lloyd AL, McBryde ES, McCaw JM, McKinley TJ, Miller JC, Morris M, O'Neill PD, Parag KV, Pearson CAB, Pellis L, Pulliam JRC, Ross JV, Tomba GS, Silverman BW, Struchiner CJ, Tildesley MJ, Trapman P, Webb CR, Mollison D, Restif O. (2020). Key questions for modelling COVID-19 exit strategies. Proceedings. Biological sciences, 287(1932)

Endo A, , Abbott S, Kucharski AJ, Funk S. (2020). Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research, (5)

Leclerc QJ, Fuller NM, Knight LE, , Funk S, Knight GM. (2020). What settings have been linked to SARS-CoV-2 transmission clusters?. Wellcome open research, (5)

Abbott Sam, Hellewell Joel, Munday James, Funk Sebastian. (2020). The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan: Exploring initial point-source exposure sizes and durations using scenario analysis. F1000 Research Limited, (5)

Liu Y, , Funk S, Flasche S. (2020). The contribution of pre-symptomatic infection to the transmission dynamics of COVID-2019. Wellcome open research, (5)

Willem Lander, Hoang Thang Va, Funk Sebastian, Coletti Pietro, Beutels Philippe, Hens Niel. (2020). SOCRATES: An online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19. Cold Spring Harbor Laboratory Press

Robert A, Kucharski AJ, Gastañaduy PA, Paul P, Funk S. (2020). Probabilistic reconstruction of measles transmission clusters from routinely collected surveillance data. Journal of the Royal Society, Interface, 17(168)

Hellewell Joel, Abbott Sam, Gimma Amy, Bosse Nikos I, Jarvis Christopher I, Russell Timothy W, Munday James D, Kucharski Adam J, Edmunds W John, Funk Sebastian, Eggo Rosalind M, Sun Fiona, Flasche Stefan, Quilty Billy J, Davies Nicholas, Liu Yang, Clifford Samuel, Klepac Petra, Jit Mark, Diamond Charlie, Gibbs Hamish, van Zandvoort Kevin. (2020). Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. Lancet Glob Health

Hellewell Joel, Abbott Sam, Gimma Amy, Bosse Nikos I, Jarvis Christopher I, Russell Timothy W, Munday James D, Kucharski Adam J, Edmunds W John, group CMMID nCoV working, Funk Sebastian, Eggo Rosalind M. (2020). Feasibility of controlling 2019-nCoV outbreaks by isolation of cases and contacts. Cold Spring Harbor Laboratory Press

Kucharski Adam J, Russell Timothy W, Diamond Charlie, Group CMMID nCoV working, Funk Sebastian, Eggo Rosalind M, Group CMMID nCoV working, Funk Sebastian, Eggo Rosalind M. (2020). Early dynamics of transmission and control of 2019-nCoV: a mathematical modelling study. Cold Spring Harbor Laboratory Press

Funk S, Camacho A, Kucharski AJ, Lowe R, Eggo RM, Edmunds WJ. (2019). Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15. PLoS computational biology, 15(2)

Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG. (2018). Genomic and epidemiological monitoring of yellow fever virus transmission potential. Science (New York, N.Y.), 361(6405)

O'Reilly KM, Lowe R, Edmunds WJ, Mayaud P, Kucharski A, Eggo RM, Funk S, Bhatia D, Khan K, Kraemer MUG, Wilder-Smith A, Rodrigues LC, Brasil P, Massad E, Jaenisch T, Cauchemez S, Brady OJ, Yakob L. (2018). Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. BMC medicine, 16(1)

Lau MS, Dalziel BD, Funk S, McClelland A, Tiffany A, Riley S, Metcalf CJ, Grenfell BT. (2017). Spatial and temporal dynamics of superspreading events in the 2014-2015 West Africa Ebola epidemic. Proceedings of the National Academy of Sciences of the United States of America, 114(9)

Heesterbeek H, Anderson RM, Andreasen V, Bansal S, De Angelis D, Dye C, Eames KT, Edmunds WJ, Frost SD, Funk S, Hollingsworth TD, House T, Isham V, Klepac P, Lessler J, Lloyd-Smith JO, Metcalf CJ, Mollison D, Pellis L, Pulliam JR, Roberts MG, Viboud C, . (2015). Modeling infectious disease dynamics in the complex landscape of global health. Science (New York, N.Y.), 347(6227)

Blumberg S, Funk S, Pulliam JR. (2014). Detecting differential transmissibilities that affect the size of self-limited outbreaks. PLoS pathogens, 10(10)

Funk S, Bogich TL, Jones KE, Kilpatrick AM, Daszak P. (2013). Quantifying trends in disease impact to produce a consistent and reproducible definition of an emerging infectious disease. PloS one, 8(8)

Bogich TL, Funk S, Malcolm TR, Chhun N, Epstein JH, Chmura AA, Kilpatrick AM, Brownstein JS, Hutchison OC, Doyle-Capitman C, Deaville R, Morse SS, Cunningham AA, Daszak P. (2013). Using network theory to identify the causes of disease outbreaks of unknown origin. Journal of the Royal Society, Interface, 10(81)

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