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Simon Cauchemez

Head of Structure

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Papers

Tsang TK, Fang VJ, Ip DKM, Perera RAPM, So HC, Leung GM, Peiris JSM, Cowling BJ, Cauchemez S. (2019). Indirect protection from vaccinating children against influenza in households. Nature communications, 10(1)

Churakov M, Villabona-Arenas CJ, Kraemer MUG, Salje H, Cauchemez S. (2019). Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony. PLoS neglected tropical diseases, 13(4)

Cauchemez S, Bourhy H. (2019). Improving the provision of rabies post-exposure prophylaxis. The Lancet. Infectious diseases, 19(1)

Cauchemez S, Hoze N, Cousien A, Nikolay B, Ten Bosch Q. (2019). How Modelling Can Enhance the Analysis of Imperfect Epidemic Data. Trends in parasitology, 35(5)

Andronico A, Courcoul A, Bronner A, Scoizec A, Lebouquin-Leneveu S, Guinat C, Paul MC, Durand B, Cauchemez S. (2019). Highly pathogenic avian influenza H5N8 in south-west France 2016-2017: A modeling study of control strategies. Epidemics

Cousien A, Abel S, Monthieux A, Andronico A, Calmont I, Cervantes M, Césaire R, Gallian P, de Lamballerie X, Laouénan C, Najioullah F, Pierre-François S, Pircher M, Salje H, Ten Bosch QA, Cabié A, Cauchemez S. (2019). Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016. American journal of epidemiology, 188(7)

Nikolay B, Cauchemez S. (2018). Enterovirus outbreak dynamics. Science (New York, N.Y.), 361(6404)

Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S. (2018). Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns. Epidemics

Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S. (2018). Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature, 557(7707)

Paireau J, Pelat C, Caserio-Schönemann C, Pontais I, Le Strat Y, Lévy-Bruhl D, Cauchemez S. (2018). Mapping influenza activity in emergency departments in France using Bayesian model-based geostatistics. Influenza and other respiratory viruses, 12(6)

Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S. (2017). Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique. American journal of epidemiology, 186(10)

Kraemer MUG, Faria NR, Reiner RC Jr., Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S. (2017). Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study. The Lancet. Infectious diseases, 17(3)

Cauchemez S, Besnard M, Garel C, Fontanet A, Mallet HP. (2016). Could clinical symptoms be a predictor of complications in Zika virus infection? - Authors' reply. Lancet (London, England), 388(10042)

Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S. (2016). How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study. Proceedings of the National Academy of Sciences of the United States of America, 113(47)

Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP. (2016). Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study. Lancet (London, England), 387(10033)

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM. (2016). Unraveling the drivers of MERS-CoV transmission. Proceedings of the National Academy of Sciences of the United States of America, 113(32)

Tsang TK, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cowling BJ, Cauchemez S. (2016). Individual Correlates of Infectivity of Influenza A Virus Infections in Households. PLoS One, 11(5)

Fumanelli L, Ajelli M, Merler S, Ferguson NM, Cauchemez S. (2016). Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. PLoS computational biology, 12(1)

Tsang TK, Cowling BJ, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cauchemez S. (2015). Influenza A Virus Shedding and Infectivity in Households. The Journal of infectious diseases, 212(9)

Faye O, Boëlle PY, Heleze E, Faye O, Loucoubar C, Magassouba N, Soropogui B, Keita S, Gakou T, Bah el HI, Koivogui L, Sall AA, Cauchemez S. (2015). Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study. The Lancet. Infectious diseases, 15(3)

Cauchemez S, Van Kerkhove MD, Archer BN, Cetron M, Cowling BJ, Grove P, Hunt D, Kojouharova M, Kon P, Ungchusak K, Oshitani H, Pugliese A, Rizzo C, Saour G, Sunagawa T, Uzicanin A, Wachtel C, Weisfuse I, Yu H, Nicoll A. (2014). School closures during the 2009 influenza pandemic: national and local experiences. BMC infectious diseases

Churcher TS, Cohen JM, Novotny J, Ntshalintshali N, Kunene S, Cauchemez S. (2014). Public health. Measuring the path toward malaria elimination. Science (New York, N.Y.), 344(6189)

Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM. (2014). Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility. The Lancet. Infectious diseases, 14(1)

Cauchemez S, Ferguson NM, Fox A, Mai le Q, Thanh le T, Thai PQ, Thoang DD, Duong TN, Minh Hoa le N, Tran Hien N, Horby P. (2014). Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam. PLoS pathogens, 10(8)

Cauchemez S, Epperson S, Biggerstaff M, Swerdlow D, Finelli L, Ferguson NM. (2013). Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus. PLoS medicine, 10(3)

Cori A, Ferguson NM, Fraser C, Cauchemez S. (2013). A new framework and software to estimate time-varying reproduction numbers during epidemics. American journal of epidemiology, 178(9)

Cauchemez S, Horby P, Fox A, Mai le Q, Thanh le T, Thai PQ, Hoa le NM, Hien NT, Ferguson NM. (2012). Influenza infection rates, measurement errors and the interpretation of paired serology. PLoS pathogens, 8(12)

Cauchemez S, Ferguson NM. (2012). Methods to infer transmission risk factors in complex outbreak data. Journal of the Royal Society, Interface, 9(68)

Cauchemez S, Bhattarai A, Marchbanks TL, Fagan RP, Ostroff S, Ferguson NM, Swerdlow D, . (2011). Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza. Proceedings of the National Academy of Sciences of the United States of America, 108(7)

Cauchemez S, Donnelly CA, Reed C, Ghani AC, Fraser C, Kent CK, Finelli L, Ferguson NM. (2009). Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States. The New England journal of medicine, 361(27)

Cauchemez S, Ferguson NM, Wachtel C, Tegnell A, Saour G, Duncan B, Nicoll A. (2009). Closure of schools during an influenza pandemic. The Lancet. Infectious diseases, 9(8)

Cauchemez S, Valleron AJ, Boëlle PY, Flahault A, Ferguson NM. (2008). Estimating the impact of school closure on influenza transmission from Sentinel data. Nature, 452(7188)

Cauchemez S, Ferguson NM. (2008). Likelihood-based estimation of continuous-time epidemic models from time-series data: application to measles transmission in London. Journal of the Royal Society, Interface, 5(25)

Cauchemez S, Temime L, Valleron AJ, Varon E, Thomas G, Guillemot D, Boëlle PY. (2006). S. pneumoniae transmission according to inclusion in conjugate vaccines: Bayesian analysis of a longitudinal follow-up in schools. BMC infectious diseases

Cauchemez S, Boëlle PY, Thomas G, Valleron AJ. (2006). Estimating in real time the efficacy of measures to control emerging communicable diseases. American journal of epidemiology, 164(6)

Cauchemez S, Boelle PY, Donnelly CA, Ferguson NM, Thomas G, Leung GM, Hedley AJ, Anderson RM, Valleron AJ. (2006). Real-time estimates in early detection of SARS. Emerging infectious diseases, 12(1)