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Simon Cauchemez

Head of Structure

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Papers

Du Z, Wang L, Cauchemez S, Xu X, Wang X, Cowling BJ, Meyers LA. (2020). Risk for Transportation of 2019 Novel Coronavirus Disease from Wuhan to Other Cities in China. Emerging infectious diseases, 26(5)

Sow A, Nikolay B, Faye O, Cauchemez S, Cano J, Diallo M, Faye O, Sadio B, Ndiaye O, Weaver SC, Dia AT, Sall AA, Malvy D. (2020). Changes in the Transmission Dynamic of Chikungunya Virus in Southeastern Senegal. Viruses, 12(2)

Capai L, Hozé N, Chiaroni J, Gross S, Djoudi R, Charrel R, Izopet J, Bosseur F, Priet S, Cauchemez S, de Lamballerie X, Falchi A, Gallian P. (2020). Seroprevalence of hepatitis E virus among blood donors on Corsica, France, 2017. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 25(5)

Tsang TK, Fang VJ, Ip DKM, Perera RAPM, So HC, Leung GM, Peiris JSM, Cowling BJ, Cauchemez S. (2019). Indirect protection from vaccinating children against influenza in households. Nature communications, 10(1)

Churakov M, Villabona-Arenas CJ, Kraemer MUG, Salje H, Cauchemez S. (2019). Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony. PLoS neglected tropical diseases, 13(4)

Mitchell PK, Mier-Y-Teran-Romero L, Biggerstaff BJ, Delorey MJ, Aubry M, Cao-Lormeau VM, Lozier MJ, Cauchemez S, Johansson MA. (2019). Reassessing Serosurvey-Based Estimates of the Symptomatic Proportion of Zika Virus Infections. American journal of epidemiology, 188(1)

Cauchemez S, Bourhy H. (2019). Improving the provision of rabies post-exposure prophylaxis. The Lancet. Infectious diseases, 19(1)

Cauchemez S, Hoze N, Cousien A, Nikolay B, Ten Bosch Q. (2019). How Modelling Can Enhance the Analysis of Imperfect Epidemic Data. Trends in parasitology, 35(5)

Andronico A, Courcoul A, Bronner A, Scoizec A, Lebouquin-Leneveu S, Guinat C, Paul MC, Durand B, Cauchemez S. (2019). Highly pathogenic avian influenza H5N8 in south-west France 2016-2017: A modeling study of control strategies. Epidemics, (28)

Cousien A, Abel S, Monthieux A, Andronico A, Calmont I, Cervantes M, Césaire R, Gallian P, de Lamballerie X, Laouénan C, Najioullah F, Pierre-François S, Pircher M, Salje H, Ten Bosch QA, Cabié A, Cauchemez S. (2019). Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016. American journal of epidemiology, 188(7)

Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A. (2018). Estimating sources and sinks of malaria parasites in Madagascar. Nature communications, 9(1)

Nikolay B, Cauchemez S. (2018). Enterovirus outbreak dynamics. Science (New York, N.Y.), 361(6404)

Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S. (2018). Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns. Epidemics, (25)

Ihantamalala FA, Rakotoarimanana FMJ, Ramiadantsoa T, Rakotondramanga JM, Pennober G, Rakotomanana F, Cauchemez S, Metcalf CJE, Herbreteau V, Wesolowski A. (2018). Spatial and temporal dynamics of malaria in Madagascar. Malaria journal, 17(1)

Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S. (2018). Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature, 557(7707)

Paireau J, Pelat C, Caserio-Schönemann C, Pontais I, Le Strat Y, Lévy-Bruhl D, Cauchemez S. (2018). Mapping influenza activity in emergency departments in France using Bayesian model-based geostatistics. Influenza and other respiratory viruses, 12(6)

Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S. (2017). Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique. American journal of epidemiology, 186(10)

Kraemer MUG, Faria NR, Reiner RC Jr., Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S. (2017). Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study. The Lancet. Infectious diseases, 17(3)

Cauchemez S, Besnard M, Garel C, Fontanet A, Mallet HP. (2016). Could clinical symptoms be a predictor of complications in Zika virus infection? - Authors' reply. Lancet (London, England), 388(10042)

Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S. (2016). How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study. Proceedings of the National Academy of Sciences of the United States of America, 113(47)

Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP. (2016). Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study. Lancet (London, England), 387(10033)

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM. (2016). Unraveling the drivers of MERS-CoV transmission. Proceedings of the National Academy of Sciences of the United States of America, 113(32)

Tsang TK, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cowling BJ, Cauchemez S. (2016). Individual Correlates of Infectivity of Influenza A Virus Infections in Households. PLoS One, 11(5)

Fumanelli L, Ajelli M, Merler S, Ferguson NM, Cauchemez S. (2016). Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. PLoS computational biology, 12(1)

Tsang TK, Fang VJ, Perera RA, Ip DK, Leung GM, Peiris JS, Cauchemez S, Cowling BJ. (2016). Interpreting Seroepidemiologic Studies of Influenza in a Context of Nonbracketing Sera. Epidemiology (Cambridge, Mass.), 27(1)

Tsang TK, Lau LLH, Cauchemez S, Cowling BJ. (2016). Household Transmission of Influenza Virus. Trends in microbiology, 24(2)

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA, . (2016). Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia. American journal of epidemiology, 183(7)

Imai N, Dorigatti I, Cauchemez S, Ferguson NM. (2016). Estimating Dengue Transmission Intensity from Case-Notification Data from Multiple Countries. PLoS neglected tropical diseases, 10(7)

Xu C, Chan KH, Tsang TK, Fang VJ, Fung RO, Ip DK, Cauchemez S, Leung GM, Peiris JS, Cowling BJ. (2015). Comparative Epidemiology of Influenza B Yamagata- and Victoria-Lineage Viruses in Households. American journal of epidemiology, 182(8)

Tsang TK, Cowling BJ, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cauchemez S. (2015). Influenza A Virus Shedding and Infectivity in Households. The Journal of infectious diseases, 212(9)

Imai N, Dorigatti I, Cauchemez S, Ferguson NM. (2015). Estimating dengue transmission intensity from sero-prevalence surveys in multiple countries. PLoS neglected tropical diseases, 9(4)

Faye O, Boëlle PY, Heleze E, Faye O, Loucoubar C, Magassouba N, Soropogui B, Keita S, Gakou T, Bah el HI, Koivogui L, Sall AA, Cauchemez S. (2015). Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study. The Lancet. Infectious diseases, 15(3)

Gambhir M, Clark TA, Cauchemez S, Tartof SY, Swerdlow DL, Ferguson NM. (2015). A change in vaccine efficacy and duration of protection explains recent rises in pertussis incidence in the United States. PLoS computational biology, 11(4)

Cauchemez S, Van Kerkhove MD, Archer BN, Cetron M, Cowling BJ, Grove P, Hunt D, Kojouharova M, Kon P, Ungchusak K, Oshitani H, Pugliese A, Rizzo C, Saour G, Sunagawa T, Uzicanin A, Wachtel C, Weisfuse I, Yu H, Nicoll A. (2014). School closures during the 2009 influenza pandemic: national and local experiences. BMC infectious diseases, (14)

Pelat C, Ferguson NM, White PJ, Reed C, Finelli L, Cauchemez S, Fraser C. (2014). Optimizing the precision of case fatality ratio estimates under the surveillance pyramid approach. American journal of epidemiology, 180(10)

Churcher TS, Cohen JM, Novotny J, Ntshalintshali N, Kunene S, Cauchemez S. (2014). Public health. Measuring the path toward malaria elimination. Science (New York, N.Y.), 344(6189)

Biggerstaff M, Cauchemez S, Reed C, Gambhir M, Finelli L. (2014). Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature. BMC infectious diseases, (14)

Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N. (2014). OutbreakTools: a new platform for disease outbreak analysis using the R software. Epidemics, (7)

Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM. (2014). Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility. The Lancet. Infectious diseases, 14(1)

Cauchemez S, Ferguson NM, Fox A, Mai le Q, Thanh le T, Thai PQ, Thoang DD, Duong TN, Minh Hoa le N, Tran Hien N, Horby P. (2014). Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam. PLoS pathogens, 10(8)

Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N. (2014). Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data. PLoS computational biology, 10(1)

Tsang TK, Cauchemez S, Perera RA, Freeman G, Fang VJ, Ip DK, Leung GM, Malik Peiris JS, Cowling BJ. (2014). Association between antibody titers and protection against influenza virus infection within households. The Journal of infectious diseases, 210(5)

Dorigatti I, Cauchemez S, Ferguson NM. (2013). Increased transmissibility explains the third wave of infection by the 2009 H1N1 pandemic virus in England. Proceedings of the National Academy of Sciences of the United States of America, 110(33)

Cauchemez S, Epperson S, Biggerstaff M, Swerdlow D, Finelli L, Ferguson NM. (2013). Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus. PLoS medicine, 10(3)

Gambhir M, Swerdlow DL, Finelli L, Van Kerkhove MD, Biggerstaff M, Cauchemez S, Ferguson NM. (2013). Multiple contributory factors to the age distribution of disease cases: a modeling study in the context of influenza A(H3N2v). Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, (57 Suppl 1)

Cori A, Ferguson NM, Fraser C, Cauchemez S. (2013). A new framework and software to estimate time-varying reproduction numbers during epidemics. American journal of epidemiology, 178(9)

Cauchemez S, Horby P, Fox A, Mai le Q, Thanh le T, Thai PQ, Hoa le NM, Hien NT, Ferguson NM. (2012). Influenza infection rates, measurement errors and the interpretation of paired serology. PLoS pathogens, 8(12)

Cauchemez S, Ferguson NM. (2012). Methods to infer transmission risk factors in complex outbreak data. Journal of the Royal Society, Interface, 9(68)

Truscott J, Fraser C, Cauchemez S, Meeyai A, Hinsley W, Donnelly CA, Ghani A, Ferguson N. (2012). Essential epidemiological mechanisms underpinning the transmission dynamics of seasonal influenza. Journal of the Royal Society, Interface, 9(67)

Dorigatti I, Cauchemez S, Pugliese A, Ferguson NM. (2012). A new approach to characterising infectious disease transmission dynamics from sentinel surveillance: application to the Italian 2009-2010 A/H1N1 influenza pandemic. Epidemics, 4(1)

Cauchemez S, Bhattarai A, Marchbanks TL, Fagan RP, Ostroff S, Ferguson NM, Swerdlow D, . (2011). Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza. Proceedings of the National Academy of Sciences of the United States of America, 108(7)

Eggo RM, Cauchemez S, Ferguson NM. (2011). Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States. Journal of the Royal Society, Interface, 8(55)

Opatowski L, Fraser C, Griffin J, de Silva E, Van Kerkhove MD, Lyons EJ, Cauchemez S, Ferguson NM. (2011). Transmission characteristics of the 2009 H1N1 influenza pandemic: comparison of 8 Southern hemisphere countries. PLoS pathogens, 7(9)

Donnelly CA, Finelli L, Cauchemez S, Olsen SJ, Doshi S, Jackson ML, Kennedy ED, Kamimoto L, Marchbanks TL, Morgan OW, Patel M, Swerdlow DL, Ferguson NM, . (2011). Serial intervals and the temporal distribution of secondary infections within households of 2009 pandemic influenza A (H1N1): implications for influenza control recommendations. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, (52 Suppl 1)

MacIntyre CR, Wang Q, Cauchemez S, Seale H, Dwyer DE, Yang P, Shi W, Gao Z, Pang X, Zhang Y, Wang X, Duan W, Rahman B, Ferguson N. (2011). A cluster randomized clinical trial comparing fit-tested and non-fit-tested N95 respirators to medical masks to prevent respiratory virus infection in health care workers. Influenza and other respiratory viruses, 5(3)

Cauchemez S, Donnelly CA, Reed C, Ghani AC, Fraser C, Kent CK, Finelli L, Ferguson NM. (2009). Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States. The New England journal of medicine, 361(27)

Fraser C, Donnelly CA, Cauchemez S, Hanage WP, Van Kerkhove MD, Hollingsworth TD, Griffin J, Baggaley RF, Jenkins HE, Lyons EJ, Jombart T, Hinsley WR, Grassly NC, Balloux F, Ghani AC, Ferguson NM, Rambaut A, Pybus OG, Lopez-Gatell H, Alpuche-Aranda CM, Chapela IB, Zavala EP, Guevara DM, Checchi F, Garcia E, Hugonnet S, Roth C, . (2009). Pandemic potential of a strain of influenza A (H1N1): early findings. Science (New York, N.Y.), 324(5934)

Lipsitch M, Riley S, Cauchemez S, Ghani AC, Ferguson NM. (2009). Managing and reducing uncertainty in an emerging influenza pandemic. The New England journal of medicine, 361(2)

MacIntyre CR, Cauchemez S, Dwyer DE, Seale H, Cheung P, Browne G, Fasher M, Wood J, Gao Z, Booy R, Ferguson N. (2009). Face mask use and control of respiratory virus transmission in households. Emerging infectious diseases, 15(2)

Legrand J, Egan JR, Hall IM, Cauchemez S, Leach S, Ferguson NM. (2009). Estimating the location and spatial extent of a covert anthrax release. PLoS computational biology, 5(1)

Cauchemez S, Ferguson NM, Wachtel C, Tegnell A, Saour G, Duncan B, Nicoll A. (2009). Closure of schools during an influenza pandemic. The Lancet. Infectious diseases, 9(8)

Cauchemez S, Valleron AJ, Boëlle PY, Flahault A, Ferguson NM. (2008). Estimating the impact of school closure on influenza transmission from Sentinel data. Nature, 452(7188)

Cauchemez S, Ferguson NM. (2008). Likelihood-based estimation of continuous-time epidemic models from time-series data: application to measles transmission in London. Journal of the Royal Society, Interface, 5(25)

Cauchemez S, Temime L, Valleron AJ, Varon E, Thomas G, Guillemot D, Boëlle PY. (2006). S. pneumoniae transmission according to inclusion in conjugate vaccines: Bayesian analysis of a longitudinal follow-up in schools. BMC infectious diseases, (6)

Cauchemez S, Boëlle PY, Thomas G, Valleron AJ. (2006). Estimating in real time the efficacy of measures to control emerging communicable diseases. American journal of epidemiology, 164(6)

Cauchemez S, Boëlle PY, Donnelly CA, Ferguson NM, Thomas G, Leung GM, Hedley AJ, Anderson RM, Valleron AJ. (2006). Real-time estimates in early detection of SARS. Emerging infectious diseases, 12(1)

Ferguson NM, Cummings DA, Cauchemez S, Fraser C, Riley S, Meeyai A, Iamsirithaworn S, Burke DS. (2005). Strategies for containing an emerging influenza pandemic in Southeast Asia. Nature, 437(7056)

Viboud C, Boëlle PY, Cauchemez S, Lavenu A, Valleron AJ, Flahault A, Carrat F. (2004). Risk factors of influenza transmission in households. The British journal of general practice : the journal of the Royal College of General Practitioners, 54(506)