Stanca Ciupe
Stanca Mihaela Ciupe

Associate Professor





Ciupe SM, Boribong BP, Kadelka S, Jones CN. (2021). Bistable Mathematical Model of Neutrophil Migratory Patterns After LPS-Induced Epigenetic Reprogramming. Frontiers in genetics, (12)

Forde JE, Ciupe SM. (2021). Quantification of the Tradeoff between Test Sensitivity and Test Frequency in a COVID-19 Epidemic-A Multi-Scale Modeling Approach. Viruses, 13(3)

Ciupe SM, Vaidya NK, Forde JE. (2021). Early events in hepatitis B infection: the role of inoculum dose. Proceedings. Biological sciences, 288(1944)

Kadelka S, Dahari H, Ciupe SM. (2021). Understanding the antiviral effects of RNAi-based therapy in HBeAg-positive chronic hepatitis B infection. Scientific reports, 11(1)

Erwin S, Childs LM, Ciupe SM. (2020). Mathematical model of broadly reactive plasma cell production. Scientific reports, 10(1)

Kaderali L, Theis F, Ganusov VV, Ciupe SM, Mehr R, Ribeiro RM, Hernandez-Vargas EA. (2019). Editorial: Integrative Computational Systems Biology Approaches in Immunology and Medicine. Frontiers in microbiology, (9)

Kadelka S, Ciupe SM. (2019). Mathematical investigation of HBeAg seroclearance. Mathematical biosciences and engineering : MBE, 16(6)

Ciupe SM. (2018). Modeling the dynamics of hepatitis B infection, immunity, and drug therapy. Immunological reviews, 285(1)

Nikin-Beers R, Blackwood JC, Childs LM, Ciupe SM. (2018). Unraveling within-host signatures of dengue infection at the population level. Journal of theoretical biology, (446)

Kadelka S, Boribong BP, Li L, Ciupe SM. (2019). Modeling the Bistable Dynamics of the Innate Immune System. Bulletin of mathematical biology, 81(1)

Ciupe SM, Miller CJ, Forde JE. (2018). A Bistable Switch in Virus Dynamics Can Explain the Differences in Disease Outcome Following SIV Infections in Rhesus Macaques. Frontiers in microbiology, (9)

Ciupe SM, Heffernan JM. (2017). In-host modeling. Infectious Disease Modelling, 2(2)

Dorratoltaj N, Nikin-Beers R, Ciupe SM, Eubank SG, Abbas KM. (2017). Multi-scale immunoepidemiological modeling of within-host and between-host HIV dynamics: systematic review of mathematical models. PeerJ, (5)

Nikin-Beers R, Ciupe SM. (2018). Modelling original antigenic sin in dengue viral infection. Mathematical medicine and biology : a journal of the IMA, 35(2)

Carracedo Rodriguez A, Chung M, Ciupe SM. (2017). Understanding the Complex Patterns Observed during Hepatitis B Virus Therapy. Viruses, 9(5)

Erwin S, Ciupe SM. (2017). Germinal center dynamics during acute and chronic infection. Mathematical biosciences and engineering : MBE, 14(3)

Verma M, Erwin S, Abedi V, Hontecillas R, Hoops S, Leber A, Bassaganya-Riera J, Ciupe SM. (2017). Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa. PloS one, 12(1)

Leber A, Abedi V, Hontecillas R, Viladomiu M, Hoops S, Ciupe S, Caughman J, Andrew T, Bassaganya-Riera J. (2016). Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection. Journal of theoretical biology, (398)

Nikin-Beers R, Ciupe SM. (2015). The role of antibody in enhancing dengue virus infection. Mathematical biosciences, (263)

Ciupe SM. (2015). Mathematical model of multivalent virus-antibody complex formation in humans following acute and chronic HIV infections. Journal of mathematical biology, 71(3)

Ciupe SM, Ribeiro RM, Perelson AS. (2014). Antibody responses during hepatitis B viral infection. PLoS computational biology, 10(7)

Ciupe SM, Schwartz EJ. (2014). Understanding virus-host dynamics following EIAV infection in SCID horses. Journal of theoretical biology, (343)

Ciupe SM, Devlin BH, Markert ML, Kepler TB. (2013). Quantification of total T-cell receptor diversity by flow cytometry and spectratyping. BMC immunology, (14)

Forde J, Volpe JM, Ciupe SM. (2012). Latently infected cell activation: a way to reduce the size of the HIV reservoir?. Bulletin of mathematical biology, 74(7)

Ciupe SM, Hews S. (2012). Mathematical models of e-antigen mediated immune tolerance and activation following prenatal HBV infection. PloS one, 7(7)

Ciupe SM, De Leenheer P, Kepler TB. (2011). Paradoxical suppression of poly-specific broadly neutralizing antibodies in the presence of strain-specific neutralizing antibodies following HIV infection. Journal of theoretical biology, 277(1)

Ciupe SM, Devlin BH, Markert ML, Kepler TB. (2009). The dynamics of T-cell receptor repertoire diversity following thymus transplantation for DiGeorge anomaly. PLoS computational biology, 5(6)

Nelson P, Smith N, Ciupe S, Zou W, Omenn GS, Pietropaolo M. (2009). Modeling dynamic changes in type 1 diabetes progression: quantifying beta-cell variation after the appearance of islet-specific autoimmune responses. Mathematical biosciences and engineering : MBE, 6(4)

Ciupe SM, Ribeiro RM, Nelson PW, Dusheiko G, Perelson AS. (2007). The role of cells refractory to productive infection in acute hepatitis B viral dynamics. Proceedings of the National Academy of Sciences of the United States of America, 104(12)

Ciupe SM, Ribeiro RM, Nelson PW, Perelson AS. (2007). Modeling the mechanisms of acute hepatitis B virus infection. Journal of theoretical biology, 247(1)

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