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Suzanne Sindi

Associate Professor

Education

Affiliations

Projects

Papers

Villali J, Dark J, Brechtel TM, Pei F, Sindi SS, Serio TR. (2020). Nucleation seed size determines amyloid clearance and establishes a barrier to prion appearance in yeast. Nature structural & molecular biology, 27(6)

Banwarth-Kuhn M, Sindi S. (2020). How and why to build a mathematical model: A case study using prion aggregation. The Journal of biological chemistry, 295(15)

Link KG, Stobb MT, Sorrells MG, Bortot M, Ruegg K, Manco-Johnson MJ, Di Paola JA, Sindi SS, Fogelson AL, Leiderman K, Neeves KB. (2020). A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A. Journal of thrombosis and haemostasis : JTH, 18(2)

Stobb MT, Monroe DM, Leiderman K, Sindi SS. (2019). Assessing the impact of product inhibition in a chromogenic assay. Analytical biochemistry, (580)

Link KG, Stobb MT, Di Paola J, Neeves KB, Fogelson AL, Sindi SS, Leiderman K. (2018). A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow. PloS one, 13(7)

Lemarre P, Pujo-Menjouet L, Sindi SS. (2019). Generalizing a mathematical model of prion aggregation allows strain coexistence and co-stability by including a novel misfolded species. Journal of mathematical biology, 78(1-2)

Valentine KM, Davini D, Lawrence TJ, Mullins GN, Manansala M, Al-Kuhlani M, Pinney JM, Davis JK, Beaudin AE, Sindi SS, Gravano DM, Hoyer KK. (2018). CD8 Follicular T Cells Promote B Cell Antibody Class Switch in Autoimmune Disease. Journal of immunology (Baltimore, Md. : 1950), 201(1)

Pei F, DiSalvo S, Sindi SS, Serio TR. (2017). A dominant-negative mutant inhibits multiple prion variants through a common mechanism. PLoS genetics, 13(10)

Sindi SS, Dale R. (2016). Culturomics as a data playground for tests of selection: Mathematical approaches to detecting selection in word use. Journal of theoretical biology, (405)

Vinson DW, Davis JK, Sindi SS, Dale R. (2016). Efficient n-gram analysis in R with cmscu. Behavior research methods, 48(3)

Langlois CR, Pei F, Sindi SS, Serio TR. (2016). Distinct Prion Domain Sequences Ensure Efficient Amyloid Propagation by Promoting Chaperone Binding or Processing In Vivo. PLoS genetics, 12(11)

Davis JK, Sindi SS. (2016). A mathematical model of the dynamics of prion aggregates with chaperone-mediated fragmentation. Journal of mathematical biology, 72(6)

Davis JK, Sindi SS. (2015). A Study in Nucleated Polymerization Models of Protein Aggregation. Applied mathematics letters, (40)

Pezza JA, Villali J, Sindi SS, Serio TR. (2014). Amyloid-associated activity contributes to the severity and toxicity of a prion phenotype. Nature communications, (5)

Sindi SS, Olofsson P. (2013). A Discrete-Time Branching Process Model of Yeast Prion Curing Curves. Mathematical population studies, 20(1)

Sindi SS, Onal S, Peng LC, Wu HT, Raphael BJ. An integrative probabilistic model for identification of structural variation in sequencing data. Genome biology, 13(3)

Cáceres A, Sindi SS, Raphael BJ, Cáceres M, González JR. (2012). Identification of polymorphic inversions from genotypes. BMC bioinformatics, (13)

Derdowski A, Sindi SS, Klaips CL, DiSalvo S, Serio TR. (2010). A size threshold limits prion transmission and establishes phenotypic diversity. Science (New York, N.Y.), 330(6004)

Sindi SS, Serio TR. (2009). Prion dynamics and the quest for the genetic determinant in protein-only inheritance. Current opinion in microbiology, 12(6)

Sindi SS, Hunt BR, Yorke JA. (2008). Duplication count distributions in DNA sequences. Physical review. E, Statistical, nonlinear, and soft matter physics, 78(6 Pt 1)

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