Atkins BD, Jewell CP, Runge MC, Ferrari MJ, Shea K, Probert WJM, Tildesley MJ. (2020). Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting. Journal of theoretical biology

Shea K, Runge MC, Pannell D, Probert WJM, Li SL, Tildesley M, Ferrari M. (2020). Harnessing multiple models for outbreak management. Science (New York, N.Y.), 368(6491)

Shea K, Borchering RK, Probert WJM, Howerton E, Bogich TL, Li S, Van Panhuis WG, Viboud C, Aguas R, Belov A, Bhargava SH, Cavany S, Chang JC, Chen C, Chen J, Chen S, Chen Y, Childs LM, Chow CC, Crooker I, Del Valle SY, España G, Fairchild G, Gerkin RC, Germann TC, Gu Q, Guan X, Guo L, Hart GR, Hladish TJ, Hupert N, Janies D, Kerr CC, Klein DJ, Klein E, Lin G, Manore C, Meyers LA, Mittler J, Mu K, Núñez RC, Oidtman R, Pasco R, Piontti APY, Paul R, Pearson CAB, Perdomo DR, Perkins TA, Pierce K, Pillai AN, Rael RC, Rosenfeld K, Ross CW, Spencer JA, Stoltzfus AB, Toh KB, Vattikuti S, Vespignani A, Wang L, White L, Xu P, Yang Y, Yogurtcu ON, Zhang W, Zhao Y, Zou D, Ferrari M, Pannell D, Tildesley M, Seifarth J, Johnson E, Biggerstaff M, Johansson M, Slayton RB, Levander J, Stazer J, Salerno J, Runge MC. (2020). COVID-19 reopening strategies at the county level in the face of uncertainty: Multiple Models for Outbreak Decision Support. medRxiv : the preprint server for health sciences

Probert WJM, Lakkur S, Fonnesbeck CJ, Shea K, Runge MC, Tildesley MJ, Ferrari MJ. (2019). Context matters: using reinforcement learning to develop human-readable, state-dependent outbreak response policies. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 374(1776), https://royalsocietypublishing.org/doi/suppl/10.1098/rstb.2018.0277

Probert WJM, Jewell CP, Werkman M, Fonnesbeck CJ, Goto Y, Runge MC, Sekiguchi S, Shea K, Keeling MJ, Ferrari MJ, Tildesley MJ. (2018). Real-time decision-making during emergency disease outbreaks. PLoS computational biology, 14(7)

Li SL, Bjørnstad ON, Ferrari MJ, Mummah R, Runge MC, Fonnesbeck CJ, Tildesley MJ, Probert WJM, Shea K. (2017). Essential information: Uncertainty and optimal control of Ebola outbreaks. Proceedings of the National Academy of Sciences of the United States of America, 114(22)

Bradbury NV, Probert WJ, Shea K, Runge MC, Fonnesbeck CJ, Keeling MJ, Ferrari MJ, Tildesley MJ. (2017). Quantifying the Value of Perfect Information in Emergency Vaccination Campaigns. PLoS computational biology, 13(2)

Probert WJ, Shea K, Fonnesbeck CJ, Runge MC, Carpenter TE, Dürr S, Garner MG, Harvey N, Stevenson MA, Webb CT, Werkman M, Tildesley MJ, Ferrari MJ. (2016). Decision-making for foot-and-mouth disease control: Objectives matter. Epidemics, (15)