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Boris Vinatzer

Professor

Education

Affiliations

Projects

Papers

Tian L, Mazloom R, Heath LS, Vinatzer BA. (2021). LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes. PeerJ, (9)

Vinatzer BA. (2021). The Power of a Statewide Survey When Phenotypic Testing Is Combined with Genomics-Enabled Molecular Characterization and Network Analyses. Phytopathology

Stam R, Gladieux P, Vinatzer BA, Goss EM, Potnis N, Candresse T, Brewer MT. (2020). Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology. Phytopathology, 111(1)

Mechan Llontop ME, Hurley K, Tian L, Bernal Galeano VA, Wildschutte HK, Marine SC, Yoder KS, Vinatzer BA. (2020). Exploring Rain as Source of Biological Control Agents for Fire Blight on Apple. Frontiers in microbiology, (11)

Roman-Reyna V, Truchon A, Sharma P, Hand FP, Mazloom R, Vinatzer BA, Jacobs JM, Allen C. (2020). Phylotype II Sequevar 1 (Race 3 Biovar 2) Strain UW848 From the 2020 U.S. Geranium Introduction. Plant disease

Tian L, Huang C, Mazloom R, Heath LS, Vinatzer BA. (2020). LINbase: a web server for genome-based identification of prokaryotes as members of crowdsourced taxa. Nucleic acids research, 48(W1)

Mechan Llontop ME, Sharma P, Aguilera Flores M, Yang S, Pollok J, Tian L, Huang C, Rideout S, Heath LS, Li S, Vinatzer BA. (2020). Strain-Level Identification of Bacterial Tomato Pathogens Directly from Metagenomic Sequences. Phytopathology, 110(4)

Eckshtain-Levi N, Weisberg AJ, Vinatzer BA. (2018). The population genetic test Tajima's D identifies genes encoding pathogen-associated molecular patterns and other virulence-related genes in Ralstonia solanacearum. Molecular plant pathology, 19(9)

Curland RD, Gao L, Bull CT, Vinatzer BA, Dill-Macky R, Van Eck L, Ishimaru CA. (2018). Genetic Diversity and Virulence of Wheat and Barley Strains of Xanthomonas translucens from the Upper Midwestern United States. Phytopathology, 108(4)

Clarke CR, Vinatzer BA. Characterizing the Immune-Eliciting Activity of Putative Microbe-Associated Molecular Patterns in Tomato. Methods in molecular biology (Clifton, N.J.), (1578)

Vinatzer BA, Tian L, Heath LS. (2017). A proposal for a portal to make earth's microbial diversity easily accessible and searchable. Antonie van Leeuwenhoek, 110(10)

Pietsch RB, Vinatzer BA, Schmale DG 3rd.. (2017). in a Freshwater Lake in Virginia, USA. Frontiers in microbiology, (8)

Monteil CL, Yahara K, Studholme DJ, Mageiros L, Méric G, Swingle B, Morris CE, Vinatzer BA, Sheppard SK. (2016). pathogens. Microbial genomics, 2(10)

Guinard J, Vinatzer BA, Poussier S, Lefeuvre P, Wicker E. (2016). Draft Genome Sequences of Nine Strains of Ralstonia solanacearum Differing in Virulence to Eggplant (Solanum melongena). Genome announcements, 4(1)

Clarke CR, Hayes BW, Runde BJ, Markel E, Swingle BM, Vinatzer BA. (2016). reveals novel chemotaxis pathways associated with motility and plant pathogenicity. PeerJ, (4)

Vinatzer BA, Weisberg AJ, Monteil CL, Elmarakeby HA, Sheppard SK, Heath LS. (2016). A Proposal for a Genome Similarity-Based Taxonomy for Plant-Pathogenic Bacteria that Is Sufficiently Precise to Reflect Phylogeny, Host Range, and Outbreak Affiliation Applied to Pseudomonas syringae sensu lato as a Proof of Concept. Phytopathology, 107(1)

Hind SR, Strickler SR, Boyle PC, Dunham DM, Bao Z, O'Doherty IM, Baccile JA, Hoki JS, Viox EG, Clarke CR, Vinatzer BA, Schroeder FC, Martin GB. (2016). Tomato receptor FLAGELLIN-SENSING 3 binds flgII-28 and activates the plant immune system. Nature plants, (2)

Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay MC, Wicker E, Castillo JA, Vinatzer BA. (2015). Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors. Phytopathology, 105(5)

Vinatzer BA, Monteil CL, Clarke CR. (2014). Harnessing population genomics to understand how bacterial pathogens emerge, adapt to crop hosts, and disseminate. Annual review of phytopathology, (52)

Marakeby H, Badr E, Torkey H, Song Y, Leman S, Monteil CL, Heath LS, Vinatzer BA. (2014). A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature. PloS one, 9(2)

Vinatzer BA. (2012). "Listening in" on how a bacterium takes over the plant vascular system. mBio, 3(5)

Vinatzer BA, Yan S. (2007). Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence. Molecular plant pathology, 9(1)

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