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Erik Volz

Senior Lecturer

Education

Affiliations

Projects

Papers

Volz E, Mishra S, Chand M, Barrett JC, Johnson R, Geidelberg L, Hinsley WR, Laydon DJ, Dabrera G, O'Toole Á, Amato R, Ragonnet-Cronin M, Harrison I, Jackson B, Ariani CV, Boyd O, Loman NJ, McCrone JT, Gonçalves S, Jorgensen D, Myers R, Hill V, Jackson DK, Gaythorpe K, Groves N, Sillitoe J, Kwiatkowski DP, , Flaxman S, Ratmann O, Bhatt S, Hopkins S, Gandy A, Rambaut A, Ferguson NM. (2021). Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England. Nature

Nouvellet P, Bhatia S, Cori A, Ainslie KEC, Baguelin M, Bhatt S, Boonyasiri A, Brazeau NF, Cattarino L, Cooper LV, Coupland H, Cucunuba ZM, Cuomo-Dannenburg G, Dighe A, Djaafara BA, Dorigatti I, Eales OD, van Elsland SL, Nascimento FF, FitzJohn RG, Gaythorpe KAM, Geidelberg L, Green WD, Hamlet A, Hauck K, Hinsley W, Imai N, Jeffrey B, Knock E, Laydon DJ, Lees JA, Mangal T, Mellan TA, Nedjati-Gilani G, Parag KV, Pons-Salort M, Ragonnet-Cronin M, Riley S, Unwin HJT, Verity R, Vollmer MAC, Volz E, Walker PGT, Walters CE, Wang H, Watson OJ, Whittaker C, Whittles LK, Xi X, Ferguson NM, Donnelly CA. (2021). Reduction in mobility and COVID-19 transmission. Nature communications, 12(1)

Ragonnet-Cronin M, Golubchik T, Moyo S, Fraser C, Essex M, Novitsky V, Volz E,. (2021). HIV genetic diversity informs stage of HIV-1 infection among patients receiving antiretroviral therapy in Botswana. The Journal of infectious diseases

Geidelberg L, Boyd O, Jorgensen D, Siveroni I, Nascimento FF, Johnson R, Ragonnet-Cronin M, Fu H, Wang H, Xi X, Chen W, Liu D, Chen Y, Tian M, Tan W, Zai J, Sun W, Li J, Li J, Volz EM, Li X, Nie Q. (2021). Genomic epidemiology of a densely sampled COVID-19 outbreak in China. Virus evolution, 7(1)

Verity R, Okell LC, Dorigatti I, Winskill P, Whittaker C, Imai N, Cuomo-Dannenburg G, Thompson H, Walker PGT, Fu H, Dighe A, Griffin JT, Baguelin M, Bhatia S, Boonyasiri A, Cori A, Cucunubá Z, FitzJohn R, Gaythorpe K, Green W, Hamlet A, Hinsley W, Laydon D, Nedjati-Gilani G, Riley S, van Elsland S, Volz E, Wang H, Wang Y, Xi X, Donnelly CA, Ghani AC, Ferguson NM. (2020). Estimates of the severity of coronavirus disease 2019: a model-based analysis. The Lancet. Infectious diseases

Didelot X, Siveroni I, Volz EM. (2020). Additive uncorrelated relaxed clock models for the dating of genomic epidemiology phylogenies. Molecular biology and evolution

Thompson HA, Imai N, Dighe A, Ainslie KEC, Baguelin M, Bhatia S, Bhatt S, Boonyasiri A, Boyd O, Brazeau NF, Cattarino L, Cooper LV, Coupland H, Cucunuba Z, Cuomo-Dannenburg G, Djaafara B, Dorigatti I, Elsland S, FitzJohn R, Fu H, Gaythorpe KAM, Green W, Hallett T, Hamlet A, Haw D, Hayes S, Hinsley W, Jeffrey B, Knock E, Laydon DJ, Lees J, Mangal TD, Mellan T, Mishra S, Mousa A, Nedjati-Gilani G, Nouvellet P, Okell L, Parag KV, Ragonnet-Cronin M, Riley S, Unwin HJT, Verity R, Vollmer M, Volz E, Walker PGT, Walters C, Wang H, Wang Y, Watson OJ, Whittaker C, Whittles LK, Winskill P, Xi X, Donnelly CA, Ferguson NM. (2020). SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China. Journal of travel medicine

Volz EM, Wiuf C, Grad YH, Frost SDW, Dennis AM, Didelot X. (2020). Identification of hidden population structure in time-scaled phylogenies. Systematic biology

Poletto C, Scarpino SV, Volz EM. (2020). Applications of predictive modelling early in the COVID-19 epidemic. The Lancet. Digital health

Fu H, Wang H, Xi X, Boonyasiri A, Wang Y, Hinsley W, Fraser KJ, McCabe R, Olivera Mesa D, Skarp J, Ledda A, Dewé T, Dighe A, Winskill P, van Elsland SL, Ainslie KEC, Baguelin M, Bhatt S, Boyd O, Brazeau NF, Cattarino L, Charles G, Coupland H, Cucunuba ZM, Cuomo-Dannenburg G, Donnelly CA, Dorigatti I, Eales OD, FitzJohn RG, Flaxman S, Gaythorpe KAM, Ghani AC, Green WD, Hamlet A, Hauck K, Haw DJ, Jeffrey B, Laydon DJ, Lees JA, Mellan T, Mishra S, Nedjati-Gilani G, Nouvellet P, Okell L, Parag KV, Ragonnet-Cronin M, Riley S, Schmit N, Thompson HA, Unwin HJT, Verity R, Vollmer MAC, Volz E, Walker PGT, Walters CE, Watson OJ, Whittaker C, Whittles LK, Imai N, Bhatia S, Ferguson NM. (2021). Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, (102)

Nascimento FF, Baral S, Geidelberg L, Mukandavire C, Schwartz SR, Turpin G, Turpin N, Diouf D, Diouf NL, Coly K, Kane CT, Ndour C, Vickerman P, Boily MC, Volz EM. (2020). Phylodynamic analysis of HIV-1 subtypes B, C and CRF 02_AG in Senegal. Epidemics, (30)

Le Vu S, Ratmann O, Delpech V, Brown AE, Gill ON, Tostevin A, Dunn D, Fraser C, Volz EM. (2019). HIV-1 Transmission Patterns in Men Who Have Sex with Men: Insights from Genetic Source Attribution Analysis. AIDS research and human retroviruses, 35(9)

Volz EM, Didelot X. (2018). Modeling the Growth and Decline of Pathogen Effective Population Size Provides Insight into Epidemic Dynamics and Drivers of Antimicrobial Resistance. Systematic biology, 67(4)

Volz EM, Siveroni I. (2018). Bayesian phylodynamic inference with complex models. PLoS computational biology, 14(11)

Volz EM, Romero-Severson E, Leitner T. (2017). Phylodynamic Inference across Epidemic Scales. Molecular biology and evolution, 34(5)

Le Vu S, Ratmann O, Delpech V, Brown AE, Gill ON, Tostevin A, Fraser C, Volz EM. (2018). Comparison of cluster-based and source-attribution methods for estimating transmission risk using large HIV sequence databases. Epidemics, (23)

Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C, . (2017). Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison. Molecular biology and evolution, 34(1)

Volz EM, Ndembi N, Nowak R, Kijak GH, Idoko J, Dakum P, Royal W, Baral S, Dybul M, Blattner WA, Charurat M. (2017). Phylodynamic analysis to inform prevention efforts in mixed HIV epidemics. Virus evolution, 3(2)

Volz EM, Frost SD. (2014). Sampling through time and phylodynamic inference with coalescent and birth-death models. Journal of the Royal Society, Interface, 11(101)

Alam SJ, Zhang X, Romero-Severson EO, Henry C, Zhong L, Volz EM, Brenner BG, Koopman JS. (2013). Detectable signals of episodic risk effects on acute HIV transmission: strategies for analyzing transmission systems using genetic data. Epidemics, 5(1)

Sadasivam RS, Volz EM, Kinney RL, Rao SR, Houston TK. (2013). Share2Quit: Web-Based Peer-Driven Referrals for Smoking Cessation. JMIR research protocols, 2(2)

Frost SD, Volz EM. (2013). Modelling tree shape and structure in viral phylodynamics. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 368(1614)

Miller JC, Volz EM. (2013). Model hierarchies in edge-based compartmental modeling for infectious disease spread. Journal of mathematical biology, 67(4)

Romero-Severson EO, Alam SJ, Volz EM, Koopman JS. (2012). Heterogeneity in Number and Type of Sexual Contacts in a Gay Urban Cohort. Statistical communications in infectious diseases, 4(1)

Zhang X, Zhong L, Romero-Severson E, Alam SJ, Henry CJ, Volz EM, Koopman JS. (2012). Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection. Statistical communications in infectious diseases, 4(1)

Miller JC, Slim AC, Volz EM. (2012). Edge-based compartmental modelling for infectious disease spread. Journal of the Royal Society, Interface, 9(70)

Volz EM. (2012). Complex population dynamics and the coalescent under neutrality. Genetics, 190(1)

Frost SD, Volz EM. (2010). Viral phylodynamics and the search for an 'effective number of infections'. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 365(1548)

Abramovitz D, Volz EM, Strathdee SA, Patterson TL, Vera A, Frost SD, . (2009). Using respondent-driven sampling in a hidden population at risk of HIV infection: who do HIV-positive recruiters recruit?. Sexually transmitted diseases, 36(12)

Volz EM, Kosakovsky Pond SL, Ward MJ, Leigh Brown AJ, Frost SD. (2009). Phylodynamics of infectious disease epidemics. Genetics, 183(4)

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