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Kaitlyn Johnson

Bio

Dr. Johnson is a postdoctoral researcher in the Department of Integrative Biology at the University of Texas at Austin. She uses mathematical models to aid in decision-making for control of infectious diseases.

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She/her/hers

Personal Academic Website

Topics of Interest/Expertise
 

Countries of Work/Collaboration

United States

Projects

Papers

Milando CW, Yon GGV, Johnson K, Urbinati A, St-Onge G, Klein B, Cori A, White LF, . (2026). A vision for estimation of the instantaneous reproductive number. Epidemics, (54)

Kim D, Pasco R, Johnson K, Fox SJ, Reich NG, Meyers LA. (2026). Local Influenza Forecasts Outperform State-Level Forecasts in the United States. medRxiv : the preprint server for health sciences

Zhou R, Johnson KE, Rousseau JF, Rathouz PJ, . (2024). Comparative effectiveness of dexamethasone in treatment of hospitalized COVID-19 patients in the United States during the first year of the pandemic: Findings from the National COVID Cohort Collaborative (N3C) data repository. PloS one, 19(3)

Fox SJ, Javan E, Pasco R, Gibson GC, Betke B, Herrera-Diestra JL, Woody S, Pierce K, Johnson KE, Johnson-León M, Lachmann M, Meyers LA. (2023). Disproportionate impacts of COVID-19 in a large US city. PLoS computational biology, 19(6)

Johnson KE, Pasco R, Woody S, Lachmann M, Johnson-León M, Bhavnani D, Klima J, Paltiel AD, Fox SJ, Meyers LA. (2023). Optimizing COVID-19 testing strategies on college campuses: Evaluation of the health and economic costs. PLoS computational biology, 19(12)

Zhou R, Johnson KE, Rousseau JF, Rathouz PJ, . (2022). Comparative Effectiveness of Dexamethasone in Treatment of Hospitalized COVID-19 Patients during the First Year of the Pandemic: The N3C Data Repository. medRxiv : the preprint server for health sciences

Bhavnani D, James ER, Johnson KE, Beaudenon-Huibregtse S, Chang P, Rathouz PJ, Weldon M, Matouschek A, Young AE. (2022). SARS-CoV-2 viral load is associated with risk of transmission to household and community contacts. BMC infectious diseases, 22(1)

Gutierrez C, Al'Khafaji AM, Brenner E, Johnson KE, Gohil SH, Lin Z, Knisbacher BA, Durrett RE, Li S, Parvin S, Biran A, Zhang W, Rassenti L, Kipps TJ, Livak KJ, Neuberg D, Letai A, Getz G, Wu CJ, Brock A. (2021). Multifunctional barcoding with ClonMapper enables high-resolution study of clonal dynamics during tumor evolution and treatment. Nature cancer, 2(7)

Johnson KE, Lachmann M, Stoddard M, Pasco R, Fox SJ, Meyers LA, Chakravarty A. (2021). Detecting in-school transmission of SARS-CoV-2 from case ratios and documented clusters. medRxiv : the preprint server for health sciences

Johnson KE, Stoddard M, Nolan RP, White DE, Hochberg NS, Chakravarty A. (2021). In the long shadow of our best intentions: Model-based assessment of the consequences of school reopening during the COVID-19 pandemic. PloS one, 16(3)

Wang X, Du Z, Johnson KE, Pasco RF, Fox SJ, Lachmann M, McLellan JS, Meyers LA. (2021). The impacts of COVID-19 vaccine timing, number of doses, and risk prioritization on mortality in the US. medRxiv : the preprint server for health sciences

Johnson KE, Howard GR, Morgan D, Brenner EA, Gardner AL, Durrett RE, Mo W, Al'Khafaji A, Sontag ED, Jarrett AM, Yankeelov TE, Brock A. (2020). Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer. Physical biology, 18(1)

Kazerouni AS, Gadde M, Gardner A, Hormuth DA 2nd., Jarrett AM, Johnson KE, Lima EABF, Lorenzo G, Phillips C, Brock A, Yankeelov TE. (2020). Integrating Quantitative Assays with Biologically Based Mathematical Modeling for Predictive Oncology. iScience, 23(12)

Johnson KE, Howard G, Mo W, Strasser MK, Lima EABF, Huang S, Brock A. (2019). Cancer cell population growth kinetics at low densities deviate from the exponential growth model and suggest an Allee effect. PLoS biology, 17(8)

Pan J, Johnson K. (2019). "Hacking" Our Way across Interdisciplinary Boundaries. Cell systems, 8(5)

Howard GR, Johnson KE, Rodriguez Ayala A, Yankeelov TE, Brock A. (2018). A multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer. Scientific reports, 8(1)

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