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Sen Pei

Assistant Professor

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Papers

Zhang R, Wang Y, Lv Z, Pei S. (2022). Evaluating the impact of stay-at-home and quarantine measures on COVID-19 spread. BMC infectious diseases, 22(1)

Chen Y, Liu T, Yu X, Zeng Q, Cai Z, Wu H, Zhang Q, Xiao J, Ma W, Pei S, Guo P. (2022). An ensemble forecast system for tracking dynamics of dengue outbreaks and its validation in China. PLoS computational biology, 18(6)

Pei S, Kandula S, Cascante Vega J, Yang W, Foerster S, Thompson C, Baumgartner J, Ahuja SD, Blaney K, Varma JK, Long T, Shaman J. (2022). Contact tracing reveals community transmission of COVID-19 in New York City. Nature communications, 13(1)

Truelove S, Smith CP, Qin M, Mullany LC, Borchering RK, Lessler J, Shea K, Howerton E, Contamin L, Levander J, Kerr J, Hochheiser H, Kinsey M, Tallaksen K, Wilson S, Shin L, Rainwater-Lovett K, Lemairtre JC, Dent J, Kaminsky J, Lee EC, Perez-Saez J, Hill A, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Orr M, Harrison G, Hurt B, Chen J, Vullikanti A, Marathe M, Hoops S, Bhattacharya P, Machi D, Chen S, Paul R, Janies D, Thill JC, Galanti M, Yamana TK, Pei S, Shaman JL, Healy JM, Slayton RB, Biggerstaff M, Johansson MA, Runge MC, Viboud C. (2022). Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination. eLife, (11)

Cramer EY, Ray EL, Lopez VK, Bracher J, Brennen A, Castro Rivadeneira AJ, Gerding A, Gneiting T, House KH, Huang Y, Jayawardena D, Kanji AH, Khandelwal A, Le K, Mühlemann A, Niemi J, Shah A, Stark A, Wang Y, Wattanachit N, Zorn MW, Gu Y, Jain S, Bannur N, Deva A, Kulkarni M, Merugu S, Raval A, Shingi S, Tiwari A, White J, Abernethy NF, Woody S, Dahan M, Fox S, Gaither K, Lachmann M, Meyers LA, Scott JG, Tec M, Srivastava A, George GE, Cegan JC, Dettwiller ID, England WP, Farthing MW, Hunter RH, Lafferty B, Linkov I, Mayo ML, Parno MD, Rowland MA, Trump BD, Zhang-James Y, Chen S, Faraone SV, Hess J, Morley CP, Salekin A, Wang D, Corsetti SM, Baer TM, Eisenberg MC, Falb K, Huang Y, Martin ET, McCauley E, Myers RL, Schwarz T, Sheldon D, Gibson GC, Yu R, Gao L, Ma Y, Wu D, Yan X, Jin X, Wang YX, Chen Y, Guo L, Zhao Y, Gu Q, Chen J, Wang L, Xu P, Zhang W, Zou D, Biegel H, Lega J, McConnell S, Nagraj VP, Guertin SL, Hulme-Lowe C, Turner SD, Shi Y, Ban X, Walraven R, Hong QJ, Kong S, van de Walle A, Turtle JA, Ben-Nun M, Riley S, Riley P, Koyluoglu U, DesRoches D, Forli P, Hamory B, Kyriakides C, Leis H, Milliken J, Moloney M, Morgan J, Nirgudkar N, Ozcan G, Piwonka N, Ravi M, Schrader C, Shakhnovich E, Siegel D, Spatz R, Stiefeling C, Wilkinson B, Wong A, Cavany S, España G, Moore S, Oidtman R, Perkins A, Kraus D, Kraus A, Gao Z, Bian J, Cao W, Lavista Ferres J, Li C, Liu TY, Xie X, Zhang S, Zheng S, Vespignani A, Chinazzi M, Davis JT, Mu K, Pastore Y Piontti A, Xiong X, Zheng A, Baek J, Farias V, Georgescu A, Levi R, Sinha D, Wilde J, Perakis G, Bennouna MA, Nze-Ndong D, Singhvi D, Spantidakis I, Thayaparan L, Tsiourvas A, Sarker A, Jadbabaie A, Shah D, Della Penna N, Celi LA, Sundar S, Wolfinger R, Osthus D, Castro L, Fairchild G, Michaud I, Karlen D, Kinsey M, Mullany LC, Rainwater-Lovett K, Shin L, Tallaksen K, Wilson S, Lee EC, Dent J, Grantz KH, Hill AL, Kaminsky J, Kaminsky K, Keegan LT, Lauer SA, Lemaitre JC, Lessler J, Meredith HR, Perez-Saez J, Shah S, Smith CP, Truelove SA, Wills J, Marshall M, Gardner L, Nixon K, Burant JC, Wang L, Gao L, Gu Z, Kim M, Li X, Wang G, Wang Y, Yu S, Reiner RC, Barber R, Gakidou E, Hay SI, Lim S, Murray C, Pigott D, Gurung HL, Baccam P, Stage SA, Suchoski BT, Prakash BA, Adhikari B, Cui J, Rodríguez A, Tabassum A, Xie J, Keskinocak P, Asplund J, Baxter A, Oruc BE, Serban N, Arik SO, Dusenberry M, Epshteyn A, Kanal E, Le LT, Li CL, Pfister T, Sava D, Sinha R, Tsai T, Yoder N, Yoon J, Zhang L, Abbott S, Bosse NI, Funk S, Hellewell J, Meakin SR, Sherratt K, Zhou M, Kalantari R, Yamana TK, Pei S, Shaman J, Li ML, Bertsimas D, Skali Lami O, Soni S, Tazi Bouardi H, Ayer T, Adee M, Chhatwal J, Dalgic OO, Ladd MA, Linas BP, Mueller P, Xiao J, Wang Y, Wang Q, Xie S, Zeng D, Green A, Bien J, Brooks L, Hu AJ, Jahja M, McDonald D, Narasimhan B, Politsch C, Rajanala S, Rumack A, Simon N, Tibshirani RJ, Tibshirani R, Ventura V, Wasserman L, O'Dea EB, Drake JM, Pagano R, Tran QT, Ho LST, Huynh H, Walker JW, Slayton RB, Johansson MA, Biggerstaff M, Reich NG. (2022). Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. Proceedings of the National Academy of Sciences of the United States of America, 119(15)

Du Z, Wang C, Liu C, Bai Y, Pei S, Adam DC, Wang L, Wu P, Lau EHY, Cowling BJ. (2022). Systematic review and meta-analyses of superspreading of SARS-CoV-2 infections. Transboundary and emerging diseases

Schneider T, Dunbar ORA, Wu J, Böttcher L, Burov D, Garbuno-Inigo A, Wagner GL, Pei S, Daraio C, Ferrari R, Shaman J. (2022). Epidemic management and control through risk-dependent individual contact interventions. PLoS computational biology, 18(6)

Galanti M, Pei S, Yamana TK, Angulo FJ, Charos A, Swerdlow DL, Shaman J. (2021). Social distancing remains key during vaccinations. Science (New York, N.Y.), 371(6528)

Pei S, Yamana TK, Kandula S, Galanti M, Shaman J. (2021). Burden and characteristics of COVID-19 in the United States during 2020. Nature

Qi Y, Shaman J, Pei S. (2021). Quantifying the impact of COVID-19 non-pharmaceutical interventions on influenza transmission in the United States. The Journal of infectious diseases

Gimbrone C, Rutherford C, Kandula S, Martínez-Alés G, Shaman J, Olfson M, Gould MS, Pei S, Galanti M, Keyes KM. (2021). Associations between COVID-19 mobility restrictions and economic, mental health, and suicide-related concerns in the US using cellular phone GPS and Google search volume data. PloS one, 16(12)

Pei S, Yamana TK, Kandula S, Galanti M, Shaman J. (2021). Publisher Correction: Burden and characteristics of COVID-19 in the United States during 2020. Nature

Zebrowski A, Rundle A, Pei S, Yaman T, Yang W, Carr BG, Sims S, Doorley R, Schluger N, Quinn JW, Shaman J, Branas CC. (2021). A Spatiotemporal Tool to Project Hospital Critical Care Capacity and Mortality From COVID-19 in US Counties. American journal of public health

Ma Y, Pei S, Shaman J, Dubrow R, Chen K. (2021). Role of meteorological factors in the transmission of SARS-CoV-2 in the United States. Nature communications, 12(1)

Pei S, Teng X, Lewis P, Shaman J. (2021). Optimizing respiratory virus surveillance networks using uncertainty propagation. Nature communications, 12(1)

Pei S, Liljeros F, Shaman J. (2021). Identifying asymptomatic spreaders of antimicrobial-resistant pathogens in hospital settings. Proceedings of the National Academy of Sciences of the United States of America, 118(37)

Xu XK, Wang L, Pei S. (2021). Multiscale mobility explains differential associations between the gross domestic product and COVID-19 transmission in Chinese cities. Journal of travel medicine

Zhou B, Pei S, Muchnik L, Meng X, Xu X, Sela A, Havlin S, Stanley HE. (2020). Realistic modelling of information spread using peer-to-peer diffusion patterns. Nature human behaviour

Pei S, Shaman J. (2020). Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness. PLoS computational biology, 16(10)

Pei S, Kandula S, Shaman J. (2020). Differential Effects of Intervention Timing on COVID-19 Spread in the United States. medRxiv : the preprint server for health sciences

Li R, Pei S, Chen B, Song Y, Zhang T, Yang W, Shaman J. (2020). Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (COVID-19). medRxiv : the preprint server for health sciences

Li R, Pei S, Chen B, Song Y, Zhang T, Yang W, Shaman J. (2020). Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV2). Science (New York, N.Y.)

Ma Y, Pei S, Shaman J, Dubrow R, Chen K. (2020). Role of air temperature and humidity in the transmission of SARS-CoV-2 in the United States. medRxiv : the preprint server for health sciences

Pei S, Kandula S, Shaman J. (2020). Differential effects of intervention timing on COVID-19 spread in the United States. Science advances, 6(49)

Bomfim R, Pei S, Shaman J, Yamana T, Makse HA, Andrade JS Jr., Lima Neto AS, Furtado V. (2020). Predicting dengue outbreaks at neighbourhood level using human mobility in urban areas. Journal of the Royal Society, Interface, 17(171)

Pei S, Wang J, Morone F, Makse HA. (2020). Influencer identification in dynamical complex systems. Journal of complex networks, 8(2)

Kramer SC, Pei S, Shaman J. (2020). Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel. PLoS computational biology, 16(10)

Pei S, Dahl KA, Yamana TK, Licker R, Shaman J. (2020). Compound Risks of Hurricane Evacuation Amid the COVID-19 Pandemic in the United States. GeoHealth, 4(12)

Kandula S, Pei S, Shaman J. (2019). Improved forecasts of influenza-associated hospitalization rates with Google Search Trends. Journal of the Royal Society, Interface, 16(155)

Sy KTL, Shaman J, Kandula S, Pei S, Gould M, Keyes KM. (2019). Spatiotemporal clustering of suicides in the US from 1999 to 2016: a spatial epidemiological approach. Social psychiatry and psychiatric epidemiology, 54(12)

Pei S, Cane MA, Shaman J. (2019). Predictability in process-based ensemble forecast of influenza. PLoS computational biology, 15(2)

Wang J, Zhang R, Wei W, Pei S, Zheng Z. (2019). On the stability of multilayer Boolean networks under targeted immunization. Chaos (Woodbury, N.Y.), 29(1)

Pei S, Morone F, Liljeros F, Makse H, Shaman JL. (2018). Inference and control of the nosocomial transmission of methicillin-resistant Staphylococcus aureus. Elife, (7)

Fu C, Dong Z, Shen J, Yang Z, Liao Y, Hu W, Pei S, Shaman J. (2018). Rotavirus Gastroenteritis Infection Among Children Vaccinated and Unvaccinated With Rotavirus Vaccine in Southern China: A Population-Based Assessment. JAMA network open, 1(4)

Pei S, Teng X, Shaman J, Morone F, Makse HA. (2017). Efficient collective influence maximization in cascading processes with first-order transitions. Scientific reports, (7)

Fu C, Shen J, Lu L, Li Y, Cao Y, Wang M, Pei S, Yang Z, Guo Q, Shaman J. (2017). Pre-vaccination evolution of antibodies among infants 0, 3 and 6months of age: A longitudinal analysis of measles, enterovirus 71 and coxsackievirus 16. Vaccine, 35(31)

Pei S, Shaman J. (2017). Counteracting structural errors in ensemble forecast of influenza outbreaks. Nature communications, 8(1)

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