
Aaron Gerding
Research Assistant
University of Massachusetts Amherst Continue Reading Aaron Gerding
Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and response was a priority for scientists and decision makers alike. In the United States, COVID-19 forecasting was coordinated by a large group of universities, companies, and government entities led by the Centers for Disease Control and Prevention and the US COVID-19 Forecast Hub (https://covid19forecasthub.org). We evaluated approximately 9.7 million forecasts of weekly state-level COVID-19 cases for predictions 1-4 weeks into the future submitted by 24 teams from August 2020 to December 2021. We assessed coverage of central prediction intervals and weighted interval scores (WIS), adjusting for missing forecasts relative to a baseline forecast, and used a Gaussian generalized estimating equation (GEE) model to evaluate differences in skill across epidemic phases that were defined by the effective reproduction number. Overall, we found high variation in skill across individual models, with ensemble-based forecasts outperforming other approaches. Forecast skill relative to the baseline was generally higher for larger jurisdictions (e.g., states compared to counties). Over time, forecasts generally performed worst in periods of rapid changes in reported cases (either in increasing or decreasing epidemic phases) with 95% prediction interval coverage dropping below 50% during the growth phases of the winter 2020, Delta, and Omicron waves. Ideally, case forecasts could serve as a leading indicator of changes in transmission dynamics. However, while most COVID-19 case forecasts outperformed a naïve baseline model, even the most accurate case forecasts were unreliable in key phases. Further research could improve forecasts of leading indicators, like COVID-19 cases, by leveraging additional real-time data, addressing performance across phases, improving the characterization of forecast confidence, and ensuring that forecasts were coherent across spatial scales. In the meantime, it is critical for forecast users to appreciate current limitations and use a broad set of indicators to inform pandemic-related decision making.
PLoS computational biology
Lopez VK, Cramer EY, Pagano R, Drake JM, O'Dea EB, Adee M, Ayer T, Chhatwal J, Dalgic OO, Ladd MA, Linas BP, Mueller PP, Xiao J, Bracher J, Castro Rivadeneira AJ, Gerding A, Gneiting T, Huang Y, Jayawardena D, Kanji AH, Le K, Mühlemann A, Niemi J, Ray EL, Stark A, Wang Y, Wattanachit N, Zorn MW, Pei S, Shaman J, Yamana TK, Tarasewicz SR, Wilson DJ, Baccam S, Gurung H, Stage S, Suchoski B, Gao L, Gu Z, Kim M, Li X, Wang G, Wang L, Wang Y, Yu S, Gardner L, Jindal S, Marshall M, Nixon K, Dent J, Hill AL, Kaminsky J, Lee EC, Lemaitre JC, Lessler J, Smith CP, Truelove S, Kinsey M, Mullany LC, Rainwater-Lovett K, Shin L, Tallaksen K, Wilson S, Karlen D, Castro L, Fairchild G, Michaud I, Osthus D, Bian J, Cao W, Gao Z, Lavista Ferres J, Li C, Liu TY, Xie X, Zhang S, Zheng S, Chinazzi M, Davis JT, Mu K, Pastore Y Piontti A, Vespignani A, Xiong X, Walraven R, Chen J, Gu Q, Wang L, Xu P, Zhang W, Zou D, Gibson GC, Sheldon D, Srivastava A, Adiga A, Hurt B, Kaur G, Lewis B, Marathe M, Peddireddy AS, Porebski P, Venkatramanan S, Wang L, Prasad PV, Walker JW, Webber AE, Slayton RB, Biggerstaff M, Reich NG, Johansson MA. (2024). Challenges of COVID-19 Case Forecasting in the US, 2020-2021. PLoS computational biology, 20(5)

Research Assistant
University of Massachusetts Amherst Continue Reading Aaron Gerding

Research Assistant Professor
Northeastern University Continue Reading Ajitesh Srivastava

Professor
Northeastern University Continue Reading Alessandro Vespignani

Assistant Professor
Harvard University Continue Reading Alison Hill

Doctoral student
University of Massachusetts Amherst Continue Reading Alvaro J. Castro Rivadeneira

Associate Research Scientist
Northeastern University Continue Reading Ana Pastore y Piontti

PhD Student
University of Massachusetts Amherst Continue Reading Ariane Stark

Data Scientist
University of Georgia Continue Reading Eamon O’Dea

Research Associate
Johns Hopkins University Continue Reading Elizabeth Lee

PhD Student
University of Massachusetts Amherst Continue Reading Estee Cramer

Research Assistant Professor
Mount Holyoke College Continue Reading Evan Ray

Scientist
Los Alamos National Laboratory Continue Reading Geoffrey Fairchild

Graduate Student
University of Massachusetts Amherst Continue Reading Graham Gibson

Research Assistant Professor
University of Virginia Continue Reading Gursharn Kaur

Professor
Columbia University Continue Reading Jeffrey Shaman

Associate Research Scientist
Northeastern University Continue Reading Jessica Davis

Distinguished Research Professor
University of Georgia Continue Reading John Drake

Assistant Professor
University of North Carolina at Chapel Hill Continue Reading Joseph Lemaitre

Associate Professor
Johns Hopkins University Continue Reading Justin Lessler

Associate Professor of Civil and Systems Engineering
Johns Hopkins University Continue Reading Lauren Gardner

Professor
University of Virginia Continue Reading Madhav Marathe

Associate Research Scientist
Northeastern University Continue Reading Matteo Chinazzi

Epidemiologist/Team Lead
U.S. Department of Health and Human Services Continue Reading Matthew Biggerstaff

Research Professor
U.S. Department of Health and Human Services Continue Reading Michael Johansson

Professor
University of Massachusetts Amherst Continue Reading Nicholas Reich

PhD Student
Emory University Continue Reading Pragati Prasad

Assistant Professor
University of California Los Angeles Continue Reading Quanquan Gu

Director, Office of Mathematical Modeling, Division of Healthcare Quality Promotion
U.S. Department of Health and Human Services Continue Reading Rachel Slayton

Assistant Professor
Columbia University Continue Reading Sen Pei

Assistant Scientist
Johns Hopkins University Continue Reading Shaun Truelove

Research Scientist
University of Virginia Continue Reading Srinivasan Venkatramanan

Associate Research Scientist
Columbia University Continue Reading Teresa Yamana

Epidemiologist
U.S. Department of Health and Human Services Continue Reading Velma Lopez

Research Fellow
University of Massachusetts Amherst Continue Reading Yuxin Huang